View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19087_low_4 (Length: 296)
Name: NF19087_low_4
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19087_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 2448975 - 2449245
Alignment:
| Q |
8 |
gatattatgctaagttatataannnnnnngaagattatattaagatggtaattgtatatttactactataggttggggagaggggagtacaaatgtcagg |
107 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448975 |
gatattatgctaagttatataattgttttgaagattatattaagatggtaattgtatatttactactataggttggggagaggggagtacaaatgtcagg |
2449074 |
T |
|
| Q |
108 |
gggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2449075 |
gggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaa |
2449174 |
T |
|
| Q |
208 |
caagttgtccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatcgctcaccgcttatc |
278 |
Q |
| |
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| T |
2449175 |
cgagttgtccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatcgctcaccgcttatc |
2449245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 2571784 - 2571554
Alignment:
| Q |
49 |
aagatggtaattgtatatttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatca |
148 |
Q |
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|||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||||||||||| || | |
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| T |
2571784 |
aagatgttaattgtatgtttactactacaggttggggagaggggagttcaaatgtcagggggacaaaagcaaagaattgcaattgcaagagccatcataa |
2571685 |
T |
|
| Q |
149 |
aaaatccaagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaacaagttgtccaagaagcttttgagaaagccacagttgaacg |
248 |
Q |
| |
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||| |||| |||||||||| |||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| | || ||||| |||||| ||| |
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| T |
2571684 |
aaatgccaaaaattctattgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcgtccaagaagctctagacaaagctgcagttggacg |
2571585 |
T |
|
| Q |
249 |
caccaccattatcatcgctcaccgcttatct |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
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| T |
2571584 |
aaccaccatcatcatcgctcaccgcttatct |
2571554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 2598537 - 2598307
Alignment:
| Q |
49 |
aagatggtaattgtatatttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatca |
148 |
Q |
| |
|
|||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| || | |
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|
| T |
2598537 |
aagatgttaattacatgtttactactacaggttggggagaggggagtacaaatgtcagggggacaaaagcaaagaattgcaattgcaagagccatcataa |
2598438 |
T |
|
| Q |
149 |
aaaatccaagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaacaagttgtccaagaagcttttgagaaagccacagttgaacg |
248 |
Q |
| |
|
||| |||| |||||||||| |||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| | || ||||| |||||| ||| |
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| T |
2598437 |
aaatgccaaaaattctattgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcgtccaagaagctctagacaaagcttcagttggacg |
2598338 |
T |
|
| Q |
249 |
caccaccattatcatcgctcaccgcttatct |
279 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |
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|
| T |
2598337 |
caccaccatcatcatcgctcaccgattatct |
2598307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 65 - 278
Target Start/End: Original strand, 2621250 - 2621463
Alignment:
| Q |
65 |
atttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattct |
164 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| || || |||| |||| |||||| |
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|
| T |
2621250 |
atttactactgcaggttggggagagaggagttcaaatgtctggggggcaaaagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattct |
2621349 |
T |
|
| Q |
165 |
attgctagacgaagcaacaagtgcactagattttgaatccgaacaagttgtccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatc |
264 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| || |||||||| |||| |||||||||||| |||||| |
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|
| T |
2621350 |
tttgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttagacaaagccaccgttggacgcaccaccatcatcatc |
2621449 |
T |
|
| Q |
265 |
gctcaccgcttatc |
278 |
Q |
| |
|
|||||||||||||| |
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|
| T |
2621450 |
gctcaccgcttatc |
2621463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 278
Target Start/End: Original strand, 2435837 - 2436066
Alignment:
| Q |
49 |
aagatggtaattgtatatttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatca |
148 |
Q |
| |
|
|||||| ||||||||| ||| ||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| | | |
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|
| T |
2435837 |
aagatgttaattgtatgcttattactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaa |
2435936 |
T |
|
| Q |
149 |
aaaatccaagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaacaagttgtccaagaagcttttgagaaagccacagttgaacg |
248 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||||||||| | || ||||| ||||| ||| |
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|
| T |
2435937 |
aaatgccaaaaattctattgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacg |
2436036 |
T |
|
| Q |
249 |
caccaccattatcatcgctcaccgcttatc |
278 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
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| T |
2436037 |
caccaccatcatcatcgctcaccgcttatc |
2436066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 66 - 279
Target Start/End: Original strand, 2589684 - 2589897
Alignment:
| Q |
66 |
tttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattcta |
165 |
Q |
| |
|
|||||||||| ||||| | ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| || || |||| |||| ||||||| |
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|
| T |
2589684 |
tttactactacaggttagagagagaggagtacaaatgtcaggggggcaaaagcaaaggattgccattgcaagagctatcataaaaatgccaaaaattcta |
2589783 |
T |
|
| Q |
166 |
ttgctagacgaagcaacaagtgcactagattttgaatccgaacaagttgtccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatcg |
265 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |||||| ||| ||||||||||||||| | || ||||| || |||| |||||||||||| ||||||| |
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|
| T |
2589784 |
ttgctagatgaagcaacaagtgcactcgattctgaatcagaaagggttgtccaagaagctctagacaaagctaccgttggacgcaccaccatcatcatcg |
2589883 |
T |
|
| Q |
266 |
ctcaccgcttatct |
279 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
2589884 |
ctcaccgcctatct |
2589897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 278
Target Start/End: Complemental strand, 2675258 - 2675046
Alignment:
| Q |
66 |
tttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattcta |
165 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||| |||| || | |||| || |
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|
| T |
2675258 |
tttattactacaggttggggagagaggagttcagatgtcagggggacaaaaacaaaggattgccattgcaagagccataataaaaatgcctaaaatttta |
2675159 |
T |
|
| Q |
166 |
ttgctagacgaagcaacaagtgcactagattttgaatccgaacaagttgtccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatcg |
265 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||| ||||||||||| |||||| ||||||||| | || ||||| | |||| |||||||||||| ||||||| |
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|
| T |
2675158 |
ttactagatgaagcaacaagtgcacttgattctgaatccgaacgagttgttcaagaagctctagacaaagcggcggttggacgcaccaccatcatcatcg |
2675059 |
T |
|
| Q |
266 |
ctcaccgcttatc |
278 |
Q |
| |
|
||||||||||||| |
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|
| T |
2675058 |
ctcaccgcttatc |
2675046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 56 - 278
Target Start/End: Complemental strand, 2643419 - 2643197
Alignment:
| Q |
56 |
taattgtatatttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatcaaaaatcc |
155 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||| ||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||| |||| || |
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|
| T |
2643419 |
taattgcatgtttactactacaggttggggagagaggagttcaaatgtcaggggggcaaaaacaaaggattgccattgcaagagccataataaaaatgcc |
2643320 |
T |
|
| Q |
156 |
aagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaacaagttgtccaagaagcttttgagaaagccacagttgaacgcaccacc |
255 |
Q |
| |
|
| |||| ||||| | |||||||| ||||||||||| |||| ||||||||||| | |||||||||| ||| | || |||| | |||||| |||||| ||| |
|
|
| T |
2643319 |
taaaattttattgttggacgaagcgacaagtgcacttgattctgaatccgaacgaattgtccaagacgctctagacaaagtcgcagttggacgcacaacc |
2643220 |
T |
|
| Q |
256 |
attatcatcgctcaccgcttatc |
278 |
Q |
| |
|
|| ||||||||||| ||| |||| |
|
|
| T |
2643219 |
atcatcatcgctcatcgcctatc |
2643197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 33788455 - 33788367
Alignment:
| Q |
103 |
tcagggggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattctattgctagacgaagcaacaagtgcact |
191 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||| || || ||||||||| |||||| |||| || |||||||| |||||||| |
|
|
| T |
33788455 |
tcaggaggacaaaagcaaagaatagccattgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgcact |
33788367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 5823515 - 5823595
Alignment:
| Q |
109 |
ggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattctattgctagacgaagcaacaagtgca |
189 |
Q |
| |
|
|||||||||||||| ||| | |||||||| |||||| | || ||||||||||| || | || || ||||||||||||||| |
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|
| T |
5823515 |
ggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgca |
5823595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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