View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19087_low_5 (Length: 289)
Name: NF19087_low_5
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19087_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 32724216 - 32723954
Alignment:
| Q |
1 |
acttcatataacgcggcgtgcgtacttgagggtggaacgaaacaagtttcatgaaattcttcatcatcaatccatttaaatatttccatccataccttat |
100 |
Q |
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| T |
32724216 |
acttcatataacgcgacgtgcgtacttgagggtggatcgaaacaagtttcatgaaattcttcatcatcaatccatttaaatatttccatccataccttat |
32724117 |
T |
|
| Q |
101 |
gcacaaaatcacaaagacaatgacatatgttttcatgattctttatatctaaagtacattgcataatttaagtcatgatcaactcgaataacaccatgtt |
200 |
Q |
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|||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32724116 |
gcacaaaatcgcaaagacaacgacatatgtttgcatgattctttatatctaaagtacattgcataatttaagtcatgatcaactcgaataacaccatgtt |
32724017 |
T |
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| Q |
201 |
tagctagctcatcacgagtcgacaatctccctagcaatgatctcctccacccaaataactgaa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32724016 |
tagctagctcatcacgagtcgacaatctccctagcaatgatctcctccacccaaataactgaa |
32723954 |
T |
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