View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19087_low_7 (Length: 262)

Name: NF19087_low_7
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19087_low_7
NF19087_low_7
[»] chr3 (3 HSPs)
chr3 (152-262)||(8377504-8377614)
chr3 (3-58)||(8377711-8377766)
chr3 (28-87)||(5187423-5187482)
[»] chr8 (6 HSPs)
chr8 (152-262)||(7094187-7094297)
chr8 (152-262)||(7097920-7098030)
chr8 (3-87)||(7094035-7094119)
chr8 (3-87)||(7097768-7097852)
chr8 (5-87)||(29822773-29822855)
chr8 (18-71)||(454010-454063)
[»] chr7 (3 HSPs)
chr7 (3-87)||(2188000-2188084)
chr7 (3-87)||(19632820-19632904)
chr7 (28-87)||(1608754-1608813)
[»] chr5 (3 HSPs)
chr5 (3-87)||(37627307-37627391)
chr5 (3-87)||(37806414-37806498)
chr5 (18-63)||(33614583-33614628)
[»] chr1 (3 HSPs)
chr1 (3-80)||(41313851-41313928)
chr1 (229-262)||(33886123-33886156)
chr1 (229-262)||(33958096-33958129)
[»] chr2 (1 HSPs)
chr2 (18-64)||(19215668-19215714)
[»] scaffold0070 (1 HSPs)
scaffold0070 (5-64)||(58857-58917)
[»] chr4 (2 HSPs)
chr4 (18-87)||(11992047-11992115)
chr4 (152-198)||(637749-637797)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 8377614 - 8377504
Alignment:
Q  152 tggagcgccctttcccttaccttaacaacagcagctcttaagatttccaccaacagtctttactctatcgaatctacacttgtgataggtctaaatgcta 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377614 tggagcgccctttcccttaccttaacaacagcagctcttaagatttccaccaacagtctttactctatcgaatctacacttgtgataggtctaaatgcta 8377515  T
Q  252 gttttagagtt 262  Q
    |||||||||||    
T  8377514 gttttagagtt 8377504  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 8377766 - 8377711
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaa 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8377766 ctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaa 8377711  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 5187423 - 5187482
Alignment:
Q  28 ttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||  |||||||| ||||||    
T  5187423 ttatactcacaaccaagcaatccaaaagcaagttcacgtagtaagtaagcatgttacaat 5187482  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 7094187 - 7094297
Alignment:
Q  152 tggagcgccctttcccttaccttaacaacagcagctcttaagatttccaccaacagtctttactctatcgaatctacacttgtgataggtctaaatgcta 251  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094187 tggagcgccctttcccttaccttaacaatagcagctcttaagatttccaccaacagtctttactctatcgaatctacacttgtgataggtctaaatgcta 7094286  T
Q  252 gttttagagtt 262  Q
    |||||||||||    
T  7094287 gttttagagtt 7094297  T

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Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 7097920 - 7098030
Alignment:
Q  152 tggagcgccctttcccttaccttaacaacagcagctcttaagatttccaccaacagtctttactctatcgaatctacacttgtgataggtctaaatgcta 251  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7097920 tggagcgccctttcccttaccttaacaatagcagctcttaagatttccaccaacagtctttactctatcgaatctacacttgtgataggtctaaatgcta 7098019  T
Q  252 gttttagagtt 262  Q
    |||||||||||    
T  7098020 gttttagagtt 7098030  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 7094035 - 7094119
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7094035 ctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatgtaagcatgatacaat 7094119  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 7097768 - 7097852
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7097768 ctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatgtaagcatgatacaat 7097852  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 29822855 - 29822773
Alignment:
Q  5 caatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  29822855 caatccaagcatgaaacaacaagtcatactcacaaccaagcaatacaaaatcaagttcacatagtatgtaagcatgatacaat 29822773  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 454010 - 454063
Alignment:
Q  18 aaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtat 71  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  454010 aaacaacaagttatattcacaaccaagcaatacaaaagcaagttcacatagtat 454063  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 2188084 - 2188000
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  2188084 ctcaatccaagcatgaaacaacaagttatactcacaaccaatcaatacaaaatcaagttcacatagtatgtaagcatgatacaat 2188000  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 19632820 - 19632904
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  19632820 ctcaatccaagcatgaaacaacaagttatactcacaacgaagcaatacaaaatcaagttcacatagtatgtaagcatgatacaat 19632904  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 1608754 - 1608813
Alignment:
Q  28 ttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  1608754 ttatactcacaaccaagcaatacaaaatcaaattcacatagtatgtaagcatgatacaat 1608813  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 37627307 - 37627391
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  37627307 ctcaatcaaggcatgaaacaacaatttatactcacaaccaagcaatataaaatcaagttcacatagtatgtaagcatgatacaat 37627391  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 37806414 - 37806498
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  37806414 ctcaatccaggcatgaaataacaagttatactcacaacaaagcaatacaaaatcaagttcacatagtatgtaagcatgatacaat 37806498  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 33614583 - 33614628
Alignment:
Q  18 aaacaacaatttatactcacaaccaagcaatacaaaatcaagttca 63  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||    
T  33614583 aaacaacaaattatactcacaaccaaacaatacaaaatcaagttca 33614628  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 41313851 - 41313928
Alignment:
Q  3 ctcaatccatgcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatg 80  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  41313851 ctcaatccaggcatgaaacaacaagttatactcacaaccaagcaatacaaaatcaagttcacatagtatgtaagcatg 41313928  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 33886156 - 33886123
Alignment:
Q  229 acttgtgataggtctaaatgctagttttagagtt 262  Q
    ||||||||||| ||||||||||||||||||||||    
T  33886156 acttgtgatagatctaaatgctagttttagagtt 33886123  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 33958096 - 33958129
Alignment:
Q  229 acttgtgataggtctaaatgctagttttagagtt 262  Q
    ||||||||||| ||||||||||||||||||||||    
T  33958096 acttgtgatagatctaaatgctagttttagagtt 33958129  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 19215714 - 19215668
Alignment:
Q  18 aaacaacaatttatactcacaaccaagcaatacaaaatcaagttcac 64  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  19215714 aaacaacaagttatactcacaaccaagcaatacaaaatcaagttcac 19215668  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 58857 - 58917
Alignment:
Q  5 caatccatgcatgaaa-caacaatttatactcacaaccaagcaatacaaaatcaagttcac 64  Q
    |||| ||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||    
T  58857 caattcatgcatgaaaacaacaagttatattcacaaccaagcaatacaaaagcaagttcac 58917  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11992047 - 11992115
Alignment:
Q  18 aaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatataagcatgatacaat 87  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||| | |||||| || ||||| ||||||    
T  11992047 aaacaacgaattatactcacagccaagcaatacaaaatcaagttc-catagtatgtatgcatggtacaat 11992115  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 637797 - 637749
Alignment:
Q  152 tggagcgccctttcccttaccttaacaa--cagcagctcttaagatttc 198  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  637797 tggagcgcactttcccttaccttaacaaagcagcagctgttaagatttc 637749  T

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