View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_high_10 (Length: 310)
Name: NF19088_high_10
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 44609374 - 44609099
Alignment:
| Q |
18 |
atcaaactaacatagaagtaaaggaaccaattgtgaaaaccaagacgnnnnnnnttcaaaaactattttaagaattccctgcaagtttactcgagctcac |
117 |
Q |
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| T |
44609374 |
atcaaactaacatagaagtaaaggaaccaattgcgaaaaccaagacgaaaaaaattcaaaaactattttaagaattccctgcaagtttactcgagctcac |
44609275 |
T |
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| Q |
118 |
cgaagtttactgaagtcattgcgagttcagccgagtaaactccgtttcatttatgagtttaccaaagttcgagtttaaaggcgaatcaactcgaaattga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44609274 |
cgaagtttactgaagtcattgcgagttcagccgagtaaactccgtttcatttatgagtttaccaaagttcgagtttaaatgcgaatcaactcgaaattga |
44609175 |
T |
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| Q |
218 |
tacctaaactcgggaaatcatacaactccacgagttaactcgcaattgcttaagagagtgtattgctagtgttact |
293 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44609174 |
tacctaaactcgggaaatcattcgactccacgagttaactcgcaattgcttaagagagtgtattgctagtgttact |
44609099 |
T |
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