View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19088_high_2 (Length: 640)

Name: NF19088_high_2
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19088_high_2
NF19088_high_2
[»] chr5 (1 HSPs)
chr5 (1-624)||(3188005-3188627)
[»] chr4 (1 HSPs)
chr4 (500-600)||(42461661-42461761)


Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Original strand, 3188005 - 3188627
Alignment:
Q  1 taaaagggaattaattagtagtgaataaacactaacatttaacagttaatacatagtagcatatagaaaatctaaaacatacatgaatcatttcaaggaa 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3188005 taaaagggtattaattagtagtgaataaacactaacatttaacagttaatacatactagcatatagaaaatctaaaacatacatgaatcatttcaaggaa 3188104  T
Q  101 tccttaagctgaatttcagtataaataaaggacagaagcagcaatactatagttttcacagtagtctcaagtccttttatttaatgtcttttacgatgca 200  Q
    ||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3188105 tccttaagctgaatttcagtataaatacaggacagaagca---atactatagttttcacagtagtctcaaatccttttatttaatgtcttttacgatgca 3188201  T
Q  201 aatgctcatataggaacatgcgacaaatttaacttgatacctttctactacgaagactgcaccggggaccctctgccacaatttcactcccttccatcta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3188202 aatgctcatataggaacatgcgacaaatttaacttgatacctttctactacgaagactgcaccggggaccctctgccacaatttcactcccttccatcta 3188301  T
Q  301 aaaaaga--gaatccatgtggaatcacacttggtactacaagaaatggttacacgcgcgtgcacacacacactatattttaaaatcatataaatttagta 398  Q
    ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3188302 aaaaaaaaagaatccatgtggaatcacacttggtactacaagaaatggttacacgcgcgtgcacacacacactatattttaaaatcatataaatttagta 3188401  T
Q  399 aatgtttagattttgtgtgagcgatgaaactcttattagattttctaatcaaaacacaccaactcgtgtttctataggccgatatgctatacatgaaatg 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3188402 aatgtttagattttgtgtgagcgatgaaactcttattagattttctaatcaaaacacaccaactcgtgtttctataggccgatatgctatacatgaaatg 3188501  T
Q  499 aaaatagcaaacctttagcttcagttttaattcatcaaactctttatcactcatgagtggttttccagacacataagcaatagatgcttccagaaatttt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3188502 aaaatagcaaacctttagcttcagttttaattcatcaaactctttatcactcatgagtggttttccagacacataagcaatagatgcttccagaaatttt 3188601  T
Q  599 tgctcagaagaacctgcacaaataac 624  Q
    ||||||||||||||||||||||||||    
T  3188602 tgctcagaagaacctgcacaaataac 3188627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 600
Target Start/End: Complemental strand, 42461761 - 42461661
Alignment:
Q  500 aaatagcaaacctttagcttcagttttaattcatcaaactctttatcactcatgagtggttttccagacacataagcaatagatgcttccagaaattttt 599  Q
    |||| ||| |||||||| |||| ||| || | |||| ||||||| ||| |||  | ||| |||||||| |||||||| ||||| ||||| ||||||||||    
T  42461761 aaattgcatacctttagattcaatttcaacttatcatactctttgtcagtcaaaattggatttccagaaacataagccatagaagcttcaagaaattttt 42461662  T
Q  600 g 600  Q
    |    
T  42461661 g 42461661  T

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