View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_high_7 (Length: 399)
Name: NF19088_high_7
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 24414659 - 24415024
Alignment:
| Q |
10 |
tgtgtttgatgaccgacactgatatgacaacgtcacgtattattacatttaattaattaatttt-ttcaagttattaatattgttgaagtgtcagcatta |
108 |
Q |
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| T |
24414659 |
tgtgtttgatgtccgacactgatatgacaacgtcacatattattacatttaattattttttttttttcaagttattaatattgttgaagtgtcagcatta |
24414758 |
T |
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| Q |
109 |
gggtagtgtatgtgttccattgcttcatagcattcagttgagtagccgacctcactaaaattattaaataaatgggacnnnnnnngcactaaataaataa |
208 |
Q |
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| T |
24414759 |
gggtagtgtatgtgtgccattgcttcatagcattcagttgagtagccgacctcactaaaattattaaataaatgggacaagaaaagcactaaataaataa |
24414858 |
T |
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| Q |
209 |
cttcagaagagacatacttggaacatagttctactgtcatctgacataaacatgtgcagttatatacaaaaaccaacctatgctgtgctttcttatttgt |
308 |
Q |
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| T |
24414859 |
cttcagaagag-----------acatagttctactgtcatctgacataaacatgtgcagttatatacaaaaaccaacctatgctgtgctttcttatttgt |
24414947 |
T |
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| Q |
309 |
aattatgc----nnnnnnnncagtgtggatttgattttagtttagtttacattacttatatactgacatttatgcct |
381 |
Q |
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| T |
24414948 |
aattatgcaaaaaaaaaaaacagtgtggatttgattttagtttagtttacattacttatatactgacatttatgcct |
24415024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 653722 - 653689
Alignment:
| Q |
48 |
attattacatttaattaattaattttttcaagtt |
81 |
Q |
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| T |
653722 |
attattacattcaattaattaattttttcaagtt |
653689 |
T |
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