View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_low_1 (Length: 654)
Name: NF19088_low_1
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 650
Target Start/End: Original strand, 25740187 - 25740815
Alignment:
| Q |
18 |
gttttatgactgatatcttcgaataatacatttgtcacgatgnnnnnnnccggtgtataagagtatcgaacctaggcaactaaagctgaagggtagattt |
117 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25740187 |
gttttatgacttatatcttcgaataatacatttgtcacgatgtttttttccggtgtataagagtatcgaacctaggccactaaagctgaagggtagattt |
25740286 |
T |
|
| Q |
118 |
tcaactagtaagataacttgtcgcggtgtttttactgtgactgattatgttgacatgttgtctgcagttatttgttggttttggatcgcacaaactggaa |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740287 |
tcaactagtaagataacttgtcgcggtgtttttactgtgactgattatgttaacatgttgtctgcagttatttgttggttttggatcgcacaaactggaa |
25740386 |
T |
|
| Q |
218 |
gacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctcaggtgatttatctttcacgctttgatg |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |
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| T |
25740387 |
gacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttcaatgtaatcaggtgatttaactttcacgctttgatg |
25740486 |
T |
|
| Q |
318 |
ttatcaaatttgtaccttcatttttgtctaatattattctacttacttatttacatgactacgcagaggagagattggaaaatggattgctttagttgct |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740487 |
ttatcaaatttgtaccttcatttttgtctaatattattc----tacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgct |
25740582 |
T |
|
| Q |
418 |
gttgttttaaggctttttattccaaagcatttccctggtatgttacacttttacttaaacttaacagtataatccgtctcatagtctattaaaagttata |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25740583 |
gttgttttaaggctttttattccaaagcatttccctggtatgttacacttttacttaaacttaacagtataatccgtttcatagtctattaaaagttata |
25740682 |
T |
|
| Q |
518 |
ttagctcctaaatgcatgtggaaaccttttttacactgaatgtgcatactaattaaactctaatgtttgattgtcacactattaataaagagaaattcaa |
617 |
Q |
| |
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||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
25740683 |
ttagcacctaaatgcatgtggaaaacttttttgcactgaatgtgcatactaattaaactctaatgtttgattgtcacactattaataaagaaatattcac |
25740782 |
T |
|
| Q |
618 |
ttacattgcgccgcttaacaccctatgcttctc |
650 |
Q |
| |
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|| ||||||||||||||||||||| || ||||| |
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| T |
25740783 |
ttgcattgcgccgcttaacaccctttgtttctc |
25740815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 157 - 498
Target Start/End: Original strand, 25744026 - 25744363
Alignment:
| Q |
157 |
actgattatgttgacatgttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt |
256 |
Q |
| |
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|||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744026 |
actgattatgttaatatgttctctgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt |
25744125 |
T |
|
| Q |
257 |
cttcagcttgccttcttttgttttctatgtcctcaggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc |
356 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744126 |
cttcagcttgccttcttttgttttcaatgtaatcaggtgatttaactttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc |
25744225 |
T |
|
| Q |
357 |
tacttacttatttacatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggctttttattccaaagcatttccctggt |
456 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25744226 |
----tacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggctttttattccaaagcatttcccaggt |
25744321 |
T |
|
| Q |
457 |
atgttacacttttacttaaacttaacagtataatccgtctca |
498 |
Q |
| |
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||||||||||||||||| |||||||| ||||| ||| ||||| |
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| T |
25744322 |
atgttacacttttacttgaacttaactgtatagtccttctca |
25744363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 195 - 435
Target Start/End: Original strand, 17383269 - 17383504
Alignment:
| Q |
195 |
gttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctcaggt |
294 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| ||| || |
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| T |
17383269 |
gttttggatcgcacaaattggaaggtaaacattcttacatcactactcattccatacattatcttcagcttgctttctatagttttctatgtcatcaagt |
17383368 |
T |
|
| Q |
295 |
gatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctacttacttatttacatgactacgcagaggagagattg |
394 |
Q |
| |
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||||| |||||||| | ||||| ||||||||| |||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||| |
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| T |
17383369 |
gatttgtctttcacac-ttgatattatcaaatatgtaccttcatttttgtcacatattatt----atacttatttttatgactatgcagaggagagattg |
17383463 |
T |
|
| Q |
395 |
gaaaatggattgctttagttgctgttgttttaaggcttttt |
435 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17383464 |
gaaaatgaattgctttagttgctgttgttttaaggcttttt |
17383504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 191 - 435
Target Start/End: Original strand, 8534851 - 8535089
Alignment:
| Q |
191 |
gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| || |
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| T |
8534851 |
gttggttttggatcgcacaaactggaagacaaac-ttcttacatcactactcattccatacattttcttcagcttgatttctatagttttctatgtcatc |
8534949 |
T |
|
| Q |
291 |
aggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctacttacttatttacatgactacgcagaggagag |
390 |
Q |
| |
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|| |||||| |||||||| ||| ||| ||||||||| || |||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||| |
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| T |
8534950 |
agatgatttgtctttcacactt-gatattatcaaatatgcaccttcatttttgtctcatattattctactta----ttttcatgactatgcagaggagag |
8535044 |
T |
|
| Q |
391 |
attggaaaatggattgctttagttgctgttgttttaaggcttttt |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8535045 |
attggaaaatggattgctttagttgctgttgttttaaggcttttt |
8535089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 36450074 - 36450133
Alignment:
| Q |
191 |
gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccata |
250 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36450074 |
gttggttttggatcgcacatactggaagacaaacattcttacatcactactcattccata |
36450133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 12510035 - 12510115
Alignment:
| Q |
179 |
ctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttctt |
259 |
Q |
| |
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|||||||||||||||| |||||||||| |||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |
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| T |
12510035 |
ctgcagttatttgttgattttggatcgtacaaactggaagaccaacattttcacatcactactcattccctacattttctt |
12510115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 12513869 - 12513960
Alignment:
| Q |
180 |
tgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttc |
271 |
Q |
| |
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||||||||| ||||| ||||||||| ||||||||| |||| |||| | | |||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
12513869 |
tgcagttatctgttgagtttggatcgtacaaactgggagaccaacactttcacatcactactcgttccatacatttttttcagcctgccttc |
12513960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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