View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_low_10 (Length: 311)
Name: NF19088_low_10
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 44167102 - 44166812
Alignment:
| Q |
7 |
tcacgaaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatgggtgcaccatgttgacacagtctcatctcttgccttatc |
106 |
Q |
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| T |
44167102 |
tcacgaaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatgggtgcaccatgttgacacagtctcatctcttgccttatc |
44167003 |
T |
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| Q |
107 |
taaagatggaaccttattgtattctgtttcatgggacagaacaatcaaagtgtggaaaaccaaagacttgacatgtttggaatcagtgcaaaacgcacac |
206 |
Q |
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| T |
44167002 |
taaagatggaaccttattgtattctgtttcatgggacagaacaatcaaagtgtggaaaaccaaagacttgacatgtttggaatcattgcaaaacgcacac |
44166903 |
T |
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| Q |
207 |
gacgatgcaataaacgcaatcacagtttctaacgatggatatgtttacaccggatcaacagatnnnnnnnttaaggtttggaagaaaaata |
297 |
Q |
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| T |
44166902 |
gacgatgcaataaacgcaatcacagtttctaacgatggatatgtttacaccggatcaacagataaaaaaattaaggtttggaagaaaaata |
44166812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 35312970 - 35312759
Alignment:
| Q |
12 |
aaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatgggtgcaccatgttgacacagtctcatctcttgccttatctaaag |
111 |
Q |
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| T |
35312970 |
aaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatgtggacactgtttcttcacttgctctgtctaaag |
35312871 |
T |
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| Q |
112 |
atggaaccttattgtattctgtttcatgggacagaacaatcaaagtgtggaaaaccaaagacttgacatgtttggaatcagtgcaaaacgcacacgacga |
211 |
Q |
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| T |
35312870 |
atggaaagtttttgtactctgtttcatgggacagaacaatcaaaatctggagaactaaagatttcacttgtttggaatcaataaccaacgcacacgatga |
35312771 |
T |
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| Q |
212 |
tgcaataaacgc |
223 |
Q |
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||| |||||||| |
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| T |
35312770 |
tgctataaacgc |
35312759 |
T |
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