View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19088_low_11 (Length: 310)
Name: NF19088_low_11
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 44609374 - 44609099
Alignment:
| Q |
18 |
atcaaactaacatagaagtaaaggaaccaattgtgaaaaccaagacgnnnnnnnttcaaaaactattttaagaattccctgcaagtttactcgagctcac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44609374 |
atcaaactaacatagaagtaaaggaaccaattgcgaaaaccaagacgaaaaaaattcaaaaactattttaagaattccctgcaagtttactcgagctcac |
44609275 |
T |
|
| Q |
118 |
cgaagtttactgaagtcattgcgagttcagccgagtaaactccgtttcatttatgagtttaccaaagttcgagtttaaaggcgaatcaactcgaaattga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44609274 |
cgaagtttactgaagtcattgcgagttcagccgagtaaactccgtttcatttatgagtttaccaaagttcgagtttaaatgcgaatcaactcgaaattga |
44609175 |
T |
|
| Q |
218 |
tacctaaactcgggaaatcatacaactccacgagttaactcgcaattgcttaagagagtgtattgctagtgttact |
293 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44609174 |
tacctaaactcgggaaatcattcgactccacgagttaactcgcaattgcttaagagagtgtattgctagtgttact |
44609099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University