View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_low_12 (Length: 299)
Name: NF19088_low_12
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 2836896 - 2836741
Alignment:
| Q |
1 |
aaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaattgaacaaatat |
100 |
Q |
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| T |
2836896 |
aaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaattgaacatatat |
2836797 |
T |
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| Q |
101 |
ccgatgattcttgcacatcaggagagaatgagttcttttatgtgaaattcttttaa |
156 |
Q |
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| T |
2836796 |
ccgatgattcttgcacatcaagagagaatgagttcttttaagtgaaattcttttaa |
2836741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 152 - 299
Target Start/End: Complemental strand, 2836654 - 2836503
Alignment:
| Q |
152 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaacccccattttaagtcttttagcaat----gaattctacaattacaaag |
247 |
Q |
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| T |
2836654 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaatccccattttaagtcttttagcaatgaatgaattctacaattacaaag |
2836555 |
T |
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| Q |
248 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactg |
299 |
Q |
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| T |
2836554 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactg |
2836503 |
T |
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