View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19088_low_13 (Length: 294)

Name: NF19088_low_13
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19088_low_13
NF19088_low_13
[»] chr5 (3 HSPs)
chr5 (12-100)||(33013625-33013714)
chr5 (163-202)||(33013776-33013815)
chr5 (201-242)||(33013862-33013903)
[»] chr4 (9 HSPs)
chr4 (8-99)||(39975120-39975212)
chr4 (8-100)||(282195-282288)
chr4 (27-99)||(42729209-42729281)
chr4 (163-202)||(282094-282133)
chr4 (163-202)||(39975018-39975057)
chr4 (201-242)||(282006-282047)
chr4 (12-100)||(37529857-37529946)
chr4 (72-100)||(49952814-49952842)
chr4 (7-100)||(50163356-50163451)
[»] chr3 (2 HSPs)
chr3 (8-99)||(36096386-36096478)
chr3 (163-202)||(36096284-36096323)
[»] chr8 (4 HSPs)
chr8 (12-99)||(21588557-21588645)
chr8 (14-100)||(10901165-10901251)
chr8 (163-202)||(21588708-21588747)
chr8 (29-83)||(12158463-12158517)
[»] scaffold0159 (1 HSPs)
scaffold0159 (13-81)||(32964-33032)
[»] chr2 (3 HSPs)
chr2 (13-81)||(5788591-5788659)
chr2 (12-100)||(36720345-36720434)
chr2 (27-83)||(6911574-6911630)
[»] scaffold0036 (1 HSPs)
scaffold0036 (13-100)||(49938-50025)
[»] scaffold0380 (1 HSPs)
scaffold0380 (13-74)||(14808-14869)
[»] scaffold0051 (1 HSPs)
scaffold0051 (27-100)||(17601-17674)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-100)||(94489-94578)
[»] chr6 (1 HSPs)
chr6 (15-76)||(26895189-26895250)
[»] chr1 (1 HSPs)
chr1 (12-100)||(28963752-28963841)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 33013625 - 33013714
Alignment:
Q  12 ccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaat-aaaaaattgcatggaagcgaatgacatcc 100  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  33013625 ccattgtcaaatcagaccaaagactaaaattgaagaaatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatcc 33013714  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 33013776 - 33013815
Alignment:
Q  163 cataataatgttgtgactttcgtgggaacctgtattggat 202  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  33013776 cataataatgttgggacttttgtgggaacctgtattggat 33013815  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 33013862 - 33013903
Alignment:
Q  201 atcacaatttcatccaaaatcttaagacattatgagtcatct 242  Q
    ||||||||| |||||||  |||||||||||||||||||||||    
T  33013862 atcacaattacatccaagttcttaagacattatgagtcatct 33013903  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 39975212 - 39975120
Alignment:
Q  8 tttcccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaat-aaaaaattgcatggaagcgaatgacatc 99  Q
    ||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  39975212 tttcccattgtcaaatcagaccaaagactaaaactaaagaaatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatc 39975120  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 282288 - 282195
Alignment:
Q  8 tttcccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaat-aaaaaattgcatggaagcgaatgacatcc 100  Q
    |||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||  | |||| |||||||||||||||| ||||||||||||    
T  282288 tttcccattgtcaaattggatcaaagactaaaactgaagaaatttaaaataatagagattgaataaaaaaattgcatggaaacgaatgacatcc 282195  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 42729209 - 42729281
Alignment:
Q  27 accaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgcatggaagcgaatgacatc 99  Q
    |||||| | ||||||||||||| |||||||||||||| || |||| ||||| |||||| ||||  ||||||||    
T  42729209 accaaatattaaaagtgaagaaatttaaaataatagaggttgaattaaaaaatgcatgaaagcagatgacatc 42729281  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 282133 - 282094
Alignment:
Q  163 cataataatgttgtgactttcgtgggaacctgtattggat 202  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  282133 cataataatgttgggacttttgtgggaacctgtattggat 282094  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 39975057 - 39975018
Alignment:
Q  163 cataataatgttgtgactttcgtgggaacctgtattggat 202  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  39975057 cataataatgttgagacttttgtgggaacctgtattggat 39975018  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 282047 - 282006
Alignment:
Q  201 atcacaatttcatccaaaatcttaagacattatgagtcatct 242  Q
    |||||| || |||||||||||| |||||||||||||||||||    
T  282047 atcacagttacatccaaaatctcaagacattatgagtcatct 282006  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 37529857 - 37529946
Alignment:
Q  12 ccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaa-attgcatggaagcgaatgacatcc 100  Q
    ||||||||||||   ||||||||  |||||||||| ||||| ||| ||||||||| ||||||||| || ||||| |||| ||||| ||||    
T  37529857 ccattgtcaaatttcaccaaagatcaaaagtgaaggattttgaaacaatagaagttgaataaaaatatagcatgaaagccaatgatatcc 37529946  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 49952814 - 49952842
Alignment:
Q  72 aaaaaattgcatggaagcgaatgacatcc 100  Q
    |||||||||||||||||||||||||||||    
T  49952814 aaaaaattgcatggaagcgaatgacatcc 49952842  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 50163451 - 50163356
Alignment:
Q  7 gtttcccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaa--attgcatggaagcgaatgacatcc 100  Q
    |||| ||||||||||||   ||||||||| ||||| |||  ||||| ||| ||||||||| |||||||||  || ||||| |||||||||| ||||    
T  50163451 gttttccattgtcaaattccaccaaagaccaaaagcgaaagattttgaaacaatagaagttgaataaaaaatatagcatgaaagcgaatgatatcc 50163356  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 36096478 - 36096386
Alignment:
Q  8 tttcccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaat-aaaaaattgcatggaagcgaatgacatc 99  Q
    ||||||||||||||||||||||||||||||||| | || || |||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  36096478 tttcccattgtcaaatcggaccaaagactaaaactaaataaatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatc 36096386  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 36096323 - 36096284
Alignment:
Q  163 cataataatgttgtgactttcgtgggaacctgtattggat 202  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  36096323 cataataatgttgggacttttgtgggaacctgtattggat 36096284  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 21588557 - 21588645
Alignment:
Q  12 ccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaat-aaaaaattgcatggaagcgaatgacatc 99  Q
    ||||||||||||| ||||||||||||||| | ||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  21588557 ccattgtcaaatcagaccaaagactaaaactaaagaaatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatc 21588645  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 10901165 - 10901251
Alignment:
Q  14 attgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgcatggaagcgaatgacatcc 100  Q
    |||||||||||| ||||||||| | |||||||| | ||||| | |||||  || |||||||||||||| || ||| |||||||||||    
T  10901165 attgtcaaatcgcaccaaagaccagaagtgaaggaatttaatacaatagtggttgaataaaaaattgcttgaaagtgaatgacatcc 10901251  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 21588708 - 21588747
Alignment:
Q  163 cataataatgttgtgactttcgtgggaacctgtattggat 202  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  21588708 cataataatgttgagacttttgtgggaacctgtattggat 21588747  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 12158517 - 12158463
Alignment:
Q  29 caaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgcat 83  Q
    ||||||| |||| ||||| | ||||||||||||||||| ||||||||||| ||||    
T  12158517 caaagaccaaaattgaaggaatttaaaataatagaagttgaataaaaaatagcat 12158463  T

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Target: scaffold0159 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 32964 - 33032
Alignment:
Q  13 cattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgc 81  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||  |||||||||||||    
T  32964 cattgtcaaatcgtaccaaagaataaaagtgaagaaatttaaaataatagaggttaaataaaaaattgc 33032  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 5788591 - 5788659
Alignment:
Q  13 cattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgc 81  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||  |||||||||||||    
T  5788591 cattgtcaaatcgtaccaaagaataaaagtgaagaaatttaaaataatagaggttaaataaaaaattgc 5788659  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 36720434 - 36720345
Alignment:
Q  12 ccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaa-taaaaaattgcatggaagcgaatgacatcc 100  Q
    ||||||||| |||  |||||| ||||||||||||||| ||||||||||| || || |||  |||||| || ||| |||||||||||||||    
T  36720434 ccattgtcagatcccaccaaaaactaaaagtgaagaaatttaaaataattgaggttgaagaaaaaaaatgtatgaaagcgaatgacatcc 36720345  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 6911630 - 6911574
Alignment:
Q  27 accaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgcat 83  Q
    ||||||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||    
T  6911630 accaaagatcaaaattgaagaaatttaaaataatagaggttgaataaaaaatagcat 6911574  T

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Target: scaffold0036 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 49938 - 50025
Alignment:
Q  13 cattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgcatggaagcgaatgacatcc 100  Q
    |||||||||||||||| |||||| |||||||||| | ||||||||||| || || |||| ||||||||| || ||| |||||||||||    
T  49938 cattgtcaaatcggacaaaagaccaaaagtgaaggaatttaaaataattgaggttgaatcaaaaattgcttgaaagtgaatgacatcc 50025  T

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Target: scaffold0380 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 14869 - 14808
Alignment:
Q  13 cattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaa 74  Q
    |||||||||||| |||||||||| |||||||||| | |||||||||||||| || |||||||    
T  14869 cattgtcaaatcagaccaaagaccaaaagtgaaggaatttaaaataatagaggttgaataaa 14808  T

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Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 17674 - 17601
Alignment:
Q  27 accaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaaattgcatggaagcgaatgacatcc 100  Q
    ||||||||| |||||||||| | |||||||||||||| || |||||||||||   ||  |||||||||||||||    
T  17674 accaaagaccaaaagtgaagtaatttaaaataatagatgttgaataaaaaatataatcaaagcgaatgacatcc 17601  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 94489 - 94578
Alignment:
Q  12 ccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaa-attgcatggaagcgaatgacatcc 100  Q
    ||||||||||||   ||||||||  |||||||||| ||||| ||| ||||||||| ||||||||| || ||||| |||| ||||| ||||    
T  94489 ccattgtcaaatttcaccaaagatcaaaagtgaaggattttgaaacaatagaagttgaataaaaatatagcatgaaagccaatgatatcc 94578  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 26895250 - 26895189
Alignment:
Q  15 ttgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaa 76  Q
    |||||||||| |||||||||| |||| ||||| | | |||||||||||| || |||||||||    
T  26895250 ttgtcaaatcagaccaaagaccaaaactgaaggaatataaaataatagaggttgaataaaaa 26895189  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 28963841 - 28963752
Alignment:
Q  12 ccattgtcaaatcggaccaaagactaaaagtgaagaattttaaaataatagaagtcgaataaaaa-attgcatggaagcgaatgacatcc 100  Q
    ||||||||||||   ||||||||  |||||||||| ||||| ||| ||||||||| ||||||||| || ||||| |||| ||||| ||||    
T  28963841 ccattgtcaaatttcaccaaagatcaaaagtgaaggattttgaaacaatagaagttgaataaaaatatagcatgaaagccaatgatatcc 28963752  T

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