View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_low_14 (Length: 286)
Name: NF19088_low_14
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_low_14 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 583 - 382
Alignment:
| Q |
8 |
agcaaaggcaaaaacaaaaatcttacatttaacaactcctctcgtccgcatcctgataagacctgcacttttcttcttgtcctctcgtgtaaaagtggtt |
107 |
Q |
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| T |
583 |
agcaaaagcaaaaacaaaaatcttacatttaacaactcctctcgtccacatcctgataagacctgcacttttcttcttgtcctctcgtgtaaaagtggtt |
484 |
T |
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| Q |
108 |
tcacaacctgataatgtatagtgttaacatcttgctgaggtctccatacagattacaatgctatattaaatgaaaatatcatgcaggaaaccaggccata |
207 |
Q |
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| T |
483 |
tcacaacctgataatgtatagtgttaacatcttgctgaggtctccatacagattccaatgctatattaaataaaaatatcatgcaggaaaccaggccata |
384 |
T |
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| Q |
208 |
ag |
209 |
Q |
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|| |
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| T |
383 |
ag |
382 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 9886674 - 9886727
Alignment:
| Q |
64 |
taagacctgcacttttcttcttgtcctctcgtgtaaaagtggtttcacaacctg |
117 |
Q |
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| T |
9886674 |
taagacttgcacttttttcctagtcctctcttgtaaaagtggcttcacaacctg |
9886727 |
T |
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