View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19088_low_16 (Length: 250)

Name: NF19088_low_16
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19088_low_16
NF19088_low_16
[»] chr6 (39 HSPs)
chr6 (5-236)||(26617746-26617977)
chr6 (5-236)||(26723674-26723905)
chr6 (5-246)||(26811623-26811866)
chr6 (26-249)||(26949772-26949995)
chr6 (30-249)||(27214528-27214750)
chr6 (30-249)||(27234478-27234700)
chr6 (26-249)||(25071770-25071993)
chr6 (26-249)||(26848771-26848994)
chr6 (26-111)||(26959415-26959500)
chr6 (30-249)||(25579830-25580049)
chr6 (30-249)||(26142976-26143195)
chr6 (26-111)||(26635939-26636024)
chr6 (26-111)||(26741905-26741990)
chr6 (30-249)||(25538651-25538870)
chr6 (44-195)||(27337936-27338087)
chr6 (44-195)||(27398676-27398827)
chr6 (158-249)||(28181225-28181316)
chr6 (26-249)||(28185477-28185700)
chr6 (26-249)||(28297566-28297789)
chr6 (26-249)||(28514284-28514507)
chr6 (30-195)||(26056091-26056256)
chr6 (30-195)||(26076061-26076226)
chr6 (26-116)||(26975296-26975386)
chr6 (158-249)||(28227061-28227152)
chr6 (69-249)||(28242915-28243095)
chr6 (158-250)||(28325591-28325683)
chr6 (158-249)||(28234675-28234765)
chr6 (26-96)||(26937370-26937440)
chr6 (69-115)||(28234808-28234854)
chr6 (61-116)||(24715829-24715884)
chr6 (30-116)||(25481986-25482072)
chr6 (30-195)||(26656154-26656319)
chr6 (30-195)||(26762125-26762290)
chr6 (175-249)||(27677616-27677690)
chr6 (175-249)||(27679057-27679131)
chr6 (154-212)||(29826175-29826233)
chr6 (55-111)||(27664999-27665055)
chr6 (69-121)||(28181353-28181405)
chr6 (69-121)||(28227189-28227241)
[»] chr2 (2 HSPs)
chr2 (26-180)||(17993537-17993691)
chr2 (154-194)||(3279857-3279897)
[»] scaffold0038 (6 HSPs)
scaffold0038 (158-249)||(34836-34927)
scaffold0038 (158-249)||(27559-27650)
scaffold0038 (69-249)||(43077-43257)
scaffold0038 (158-250)||(116906-116998)
scaffold0038 (69-115)||(34970-35016)
scaffold0038 (69-121)||(27687-27739)
[»] chr1 (3 HSPs)
chr1 (30-117)||(28127523-28127610)
chr1 (30-117)||(28164207-28164294)
chr1 (70-249)||(268241-268420)
[»] scaffold0019 (1 HSPs)
scaffold0019 (61-249)||(58170-58358)
[»] chr4 (7 HSPs)
chr4 (29-114)||(18699243-18699328)
chr4 (118-250)||(5090899-5091031)
chr4 (70-114)||(18655361-18655405)
chr4 (70-114)||(18723969-18724013)
chr4 (70-114)||(18731388-18731432)
chr4 (158-249)||(18655449-18655540)
chr4 (29-114)||(18679410-18679495)
[»] chr8 (1 HSPs)
chr8 (70-249)||(29273667-29273846)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 26617977 - 26617746
Alignment:
Q  5 gagtgagatgaagaagcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgt 104  Q
    |||||| ||||||||| || ||||||||||||||||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  26617977 gagtgaaatgaagaagtgtgcttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgt 26617878  T
Q  105 tattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaac 204  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||| | | ||||||||| | |||||||||||||||||||||||||||||||||    
T  26617877 tattttggaacctttcttcaaactcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaac 26617778  T
Q  205 gagacgactcttttccttgaagtagtgaatga 236  Q
     || ||||| |||||||| |||||||||||||    
T  26617777 aaggcgactattttcctttaagtagtgaatga 26617746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 26723905 - 26723674
Alignment:
Q  5 gagtgagatgaagaagcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgt 104  Q
    |||||| ||||||||| || ||||||||||||||||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  26723905 gagtgaaatgaagaagtgtgcttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgt 26723806  T
Q  105 tattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaac 204  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||| | | ||||||||| | |||||||||||||||||||||||||||||||||    
T  26723805 tattttggaacctttcttcaaactcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaac 26723706  T
Q  205 gagacgactcttttccttgaagtagtgaatga 236  Q
     || ||||| |||||||| |||||||||||||    
T  26723705 aaggcgactattttcctttaagtagtgaatga 26723674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 26811866 - 26811623
Alignment:
Q  5 gagtgagatgaagaa--gcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttctt 102  Q
    |||||| ||||||||  || |||||||||||| |||||||||||||  || |||||| ||||||| ||||||||||||||||||| |||||||||| |||    
T  26811866 gagtgaaatgaagaatagcttacttgaaatgaaagccagataagttaccaacttggttaagagctatcttccatttctgcaaccgatccatgttttcctt 26811767  T
Q  103 gttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaaga 202  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||| | ||| | |||||||| |||||||||||||||||| ||||||||||||| |||    
T  26811766 gttattttggaacatttcttcaaactcagtaagtgcttcaccatacttgttattttgatgtcgcacgtgagaaggttccacaccatagaaaactggtaga 26811667  T
Q  203 acgagacgactcttttccttgaagtagtgaatgatatggacaag 246  Q
    || || ||||  |||||||||||||||| |||||| ||||||||    
T  26811666 acaaggcgacctttttccttgaagtagttaatgatgtggacaag 26811623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 26949995 - 26949772
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 125  Q
    |||||||| |||||||||||||  ||| ||| ||  |||||| ||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||||||     
T  26949995 ttgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttcat 26949896  T
Q  126 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 225  Q
     || || ||||||| ||||||| |||| | |||||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||  |||||||||||    
T  26949895 gcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacctttttccttgaa 26949796  T
Q  226 gtagtgaatgatatggacaagttc 249  Q
    ||||||||||||||||||||||||    
T  26949795 gtagtgaatgatatggacaagttc 26949772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 27214750 - 27214528
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27214750 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27214651  T
Q  130 agaaagtgctgcaccatacc---tattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 226  Q
    || ||| ||| ||||||| |   | ||  || ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27214650 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27214551  T
Q  227 tagtgaatgatatggacaagttc 249  Q
     | ||| |||| |||||||||||    
T  27214550 caatgagtgatgtggacaagttc 27214528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 27234478 - 27234700
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27234478 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27234577  T
Q  130 agaaagtgctgcaccatacc---tattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 226  Q
    || ||| ||| ||||||| |   | ||  || ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27234578 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27234677  T
Q  227 tagtgaatgatatggacaagttc 249  Q
     | ||| |||| |||||||||||    
T  27234678 caatgagtgatgtggacaagttc 27234700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 25071993 - 25071770
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 125  Q
    ||||||||||  ||||||||||| ||||||| || ||||||| |||||||| || ||||||||||||||| || |||||||||||| ||||  ||||||     
T  25071993 ttgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctccatgtgttccttgttattttgaaacccctcttcat 25071894  T
Q  126 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 225  Q
     || || || || | ||||||| || | | || | | ||| || || ||||||||     ||||||||| ||| ||||| || |||||||||||||||||    
T  25071893 gcttagcaaatgattcaccataactgtcattcagttttcgcacctgcgaaggttcggtgccatagaaaattggtagaacaaggcgactcttttccttgaa 25071794  T
Q  226 gtagtgaatgatatggacaagttc 249  Q
    |||||||||||| |||||||||||    
T  25071793 gtagtgaatgatgtggacaagttc 25071770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 26848994 - 26848771
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 125  Q
    |||||||| | |||||||||||| ||||| |||| ||||||| ||||||||||  |||| ||||||||| ||| |||||||||||| |||   ||||||     
T  26848994 ttgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttgaaacacctcttcat 26848895  T
Q  126 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 225  Q
     || || ||||||| ||||||| ||| || |||||||||| || ||||||||||| |   |||||||||| |||| ||| |  | || |||||||||| |    
T  26848894 gcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttttccttgga 26848795  T
Q  226 gtagtgaatgatatggacaagttc 249  Q
    | | |||||||| |||||||||||    
T  26848794 gcaatgaatgatgtggacaagttc 26848771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 26959500 - 26959415
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 111  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||| |||| |||||||    
T  26959500 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttg 26959415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 25580049 - 25579830
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  25580049 aatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 25579950  T
Q  130 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 228  Q
    || ||| | || ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25579949 agtaagatact-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25579851  T
Q  229 gtgaatgatatggacaagttc 249  Q
    ||||||||| |||||||||||    
T  25579850 gtgaatgatgtggacaagttc 25579830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 26143195 - 26142976
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  26143195 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 26143096  T
Q  130 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 228  Q
    || ||| |||| |||||||  |   | |||||| ||||| ||||| ||||||||||||||||||||| ||||  || |  | |||||||  |||| || |    
T  26143095 agtaagatgct-caccataaatcccactctgatttcgtatgtgagtaggttccacatcatagaaaacgggaaatactaagcaactctttgtcttgtagca 26142997  T
Q  229 gtgaatgatatggacaagttc 249  Q
    ||||||||| |||||||||||    
T  26142996 gtgaatgatgtggacaagttc 26142976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 26636024 - 26635939
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 111  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| |||||||    
T  26636024 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttg 26635939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 26741990 - 26741905
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 111  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| |||||||    
T  26741990 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttg 26741905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 25538870 - 25538651
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| ||||||||||||||||  |||||||| ||||| ||||||  ||     
T  25538870 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttcatgctt 25538771  T
Q  130 ag-aaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 228  Q
    || ||| |||| ||||||| ||   | ||||||||||||  |||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25538770 agtaaaatgct-caccataactcccactctgatgtcgtaactgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25538672  T
Q  229 gtgaatgatatggacaagttc 249  Q
    ||||||||| |||||||||||    
T  25538671 gtgaatgatctggacaagttc 25538651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 27337936 - 27338087
Alignment:
Q  44 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 142  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27337936 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27338034  T
Q  143 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 195  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || ||||||||||    
T  27338035 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaac 27338087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 27398676 - 27398827
Alignment:
Q  44 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 142  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27398676 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27398774  T
Q  143 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 195  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || ||||||||||    
T  27398775 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaac 27398827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 28181316 - 28181225
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| |||||||||||    
T  28181316 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttc 28181225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 28185700 - 28185477
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 125  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||| | | |||||||||||||||| | | |  |     
T  28185700 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaacttctttatat 28185601  T
Q  126 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 225  Q
      |||   ||||||  |||||| ||    || |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||    
T  28185600 gatcatccagtgctttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaa 28185501  T
Q  226 gtagtgaatgatatggacaagttc 249  Q
    | ||| |||||| |||||||||||    
T  28185500 gcagttaatgatgtggacaagttc 28185477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 28297566 - 28297789
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 125  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28297566 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28297665  T
Q  126 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 225  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28297666 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28297765  T
Q  226 gtagtgaatgatatggacaagttc 249  Q
    | |||||||||| |||||||||||    
T  28297766 gcagtgaatgatgtggacaagttc 28297789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 28514507 - 28514284
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 125  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28514507 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28514408  T
Q  126 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 225  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28514407 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28514308  T
Q  226 gtagtgaatgatatggacaagttc 249  Q
    | |||||||||| |||||||||||    
T  28514307 gcagtgaatgatgtggacaagttc 28514284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 26056256 - 26056091
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26056256 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26056157  T
Q  130 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 195  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| |||||||||||||||||||||    
T  26056156 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaac 26056091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 26076226 - 26076061
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26076226 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26076127  T
Q  130 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 195  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| |||||||||||||||||||||    
T  26076126 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaac 26076061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 26975386 - 26975296
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 116  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||  |||||||||||| |||||  || |||||||| ||||    
T  26975386 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctccaagttttcatttttattttgaaacc 26975296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 28227152 - 28227061
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| |||||||||||    
T  28227152 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttc 28227061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 28243095 - 28242915
Alignment:
Q  69 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 168  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  28243095 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 28242996  T
Q  169 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| |||||||||||    
T  28242995 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttc 28242915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 28325683 - 28325591
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttca 250  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || ||||||||||||    
T  28325683 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttca 28325591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 28234765 - 28234675
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| || || || ||||||| |||| | | |||||| |||||||||||    
T  28234765 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagca-taaatgatgtggacaagttc 28234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 26937440 - 26937370
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtt 96  Q
    |||||||| | |||||| ||||| || ||||||| ||||||| ||||||||||| |||||| |||||||||    
T  26937440 ttgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatgtt 26937370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 28234854 - 28234808
Alignment:
Q  69 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 115  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  28234854 tcttccatttctgcaacctctccatgttatccttgttattttggaac 28234808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 24715884 - 24715829
Alignment:
Q  61 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 116  Q
    ||||||||||||| ||||| ||||||| ||||||| || |||||||||||| ||||    
T  24715884 aagagctgtcttctatttcagcaaccggtccatgtgttccttgttattttgaaacc 24715829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 25482072 - 25481986
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 116  Q
    |||||||||| || || || ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||    
T  25482072 aatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacc 25481986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 26656319 - 26656154
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26656319 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26656220  T
Q  130 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 195  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| ||||||||||    
T  26656219 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaac 26656154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 26762290 - 26762125
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 129  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26762290 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26762191  T
Q  130 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 195  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| ||||||||||    
T  26762190 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaac 26762125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 27677616 - 27677690
Alignment:
Q  175 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| |||||||||||    
T  27677616 aggttccacagcaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttc 27677690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 27679131 - 27679057
Alignment:
Q  175 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| |||||||||||    
T  27679131 aggttccacaccaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttc 27679057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 29826233 - 29826175
Alignment:
Q  154 agtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgac 212  Q
    |||||||||||| || |||||||| ||||||||||||||||  || | |||||||||||    
T  29826233 agtctgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaacgagacgac 29826175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 27664999 - 27665055
Alignment:
Q  55 ttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 111  Q
    ||||| |||||||  |||||||||| |||||||||||||||||| | ||| ||||||    
T  27664999 ttggtgaagagcttccttccatttcagcaaccgctccatgttttccatgtcattttg 27665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 28181405 - 28181353
Alignment:
Q  69 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 121  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28181405 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28181353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 28227241 - 28227189
Alignment:
Q  69 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 121  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28227241 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 17993537 - 17993691
Alignment:
Q  26 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 125  Q
    |||||||| | |||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||| |||| ||||||| || |  ||||||     
T  17993537 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttcat 17993636  T
Q  126 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttc 180  Q
     || || ||||||| ||||||| |||| | |||||||||| || |||||||||||    
T  17993637 gcttagcaagtgcttcaccataactatcattctgatgtcgcacctgagaaggttc 17993691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 3279897 - 3279857
Alignment:
Q  154 agtctgatgtcgtacgtgagaaggttccacatcatagaaaa 194  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  3279897 agtctgatgtcgcacgtgggaaggttccacatcatagaaaa 3279857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 34927 - 34836
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| |||||||||||    
T  34927 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttc 34836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 27650 - 27559
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| |||||||||||    
T  27650 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttc 27559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 43257 - 43077
Alignment:
Q  69 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 168  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  43257 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 43158  T
Q  169 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| |||||||||||    
T  43157 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttc 43077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 116998 - 116906
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttca 250  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || ||||||||||||    
T  116998 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttca 116906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 35016 - 34970
Alignment:
Q  69 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 115  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  35016 tcttccatttctgcaacctctccatgttatccttgttattttggaac 34970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 27739 - 27687
Alignment:
Q  69 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 121  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  27739 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 27687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 28127523 - 28127610
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 117  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28127610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 28164207 - 28164294
Alignment:
Q  30 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 117  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28164207 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 268241 - 268420
Alignment:
Q  70 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 169  Q
    ||||||||  |||||||||||||||||||||||| |||||||||| || |||||   || ||  ||   | ||||||| ||   | | |||||||||| |    
T  268241 cttccattgatgcaaccgctccatgtttttcttgctattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgtcgtatg 268340  T
Q  170 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||| |||| || |||||||||| |||||||||||    
T  268341 tgagtaggatccacgccatagaagacgggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtggacaagttc 268420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 58170 - 58358
Alignment:
Q  61 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctga 160  Q
    |||||||||||||||||||||||||| ||| ||| | | |||| ||||||||||||| ||   |  ||| | |||||||  |||||| ||   |   |||    
T  58170 aagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctcggcaagtgctttaccataacttccatcttga 58269  T
Q  161 tgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    ||||| ||||||||||||||||| |||||||||| ||| | ||| || || |  | ||||| |||| |||||||||| |||||||||||    
T  58270 tgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcagtgaatgatgtggacaagttc 58358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 18699243 - 18699328
Alignment:
Q  29 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 114  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||||||||||||||||||    
T  18699243 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaa 18699328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 250
Target Start/End: Original strand, 5090899 - 5091031
Alignment:
Q  118 ttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttt 217  Q
    |||||||  ||||| ||||||| ||||||| ||   |||||||| ||| || ||||||||||||||| |||||||||  || | ||| || | ||  |||    
T  5090899 ttcttcatgctcagcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattt 5090998  T
Q  218 tccttgaagtagtgaatgatatggacaagttca 250  Q
    |||||| || ||||||| |||||||||||||||    
T  5090999 tccttggagcagtgaataatatggacaagttca 5091031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 18655361 - 18655405
Alignment:
Q  70 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 114  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18655361 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18655405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 18723969 - 18724013
Alignment:
Q  70 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 114  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18723969 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18724013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 18731388 - 18731432
Alignment:
Q  70 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 114  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18731388 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18731432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 18655449 - 18655540
Alignment:
Q  158 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||||||||| ||||| ||| |||||  |||||||||| |||| ||||||||||| ||||  |||| || ||||||||||  ||||||||||    
T  18655449 tgatgtcgtatgtgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcggacaagttc 18655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 18679410 - 18679495
Alignment:
Q  29 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 114  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||| ||||||||||||||    
T  18679410 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaa 18679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 29273667 - 29273846
Alignment:
Q  70 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 169  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||| || |||||  ||| ||  ||   | ||||||| ||   | | |||||||||| |    
T  29273667 cttccattgatgcaaccgatccatgtttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatg 29273766  T
Q  170 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 249  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||  |||| || |||||||||| |||||||||||    
T  29273767 tgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgtcttgtagcagtgaatgatgtggacaagttc 29273846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University