View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19088_low_17 (Length: 249)

Name: NF19088_low_17
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19088_low_17
NF19088_low_17
[»] chr6 (51 HSPs)
chr6 (19-247)||(27214315-27214543)
chr6 (19-247)||(27234685-27234913)
chr6 (19-249)||(26811407-26811637)
chr6 (19-249)||(26949559-26949789)
chr6 (19-249)||(27665176-27665406)
chr6 (19-249)||(25071557-25071787)
chr6 (19-249)||(26848558-26848788)
chr6 (19-249)||(26974950-26975180)
chr6 (19-249)||(26635588-26635818)
chr6 (19-249)||(26741554-26741784)
chr6 (19-249)||(26959063-26959294)
chr6 (55-243)||(26617260-26617441)
chr6 (55-243)||(26723188-26723369)
chr6 (23-146)||(27229134-27229257)
chr6 (19-158)||(27698644-27698783)
chr6 (23-158)||(27724995-27725130)
chr6 (25-158)||(28781043-28781176)
chr6 (25-158)||(28786182-28786315)
chr6 (25-158)||(28792303-28792436)
chr6 (25-158)||(27611152-27611285)
chr6 (25-158)||(27718529-27718662)
chr6 (40-146)||(27531359-27531465)
chr6 (52-146)||(29825958-29826052)
chr6 (18-146)||(31284185-31284313)
chr6 (23-146)||(27604867-27604990)
chr6 (25-146)||(26802346-26802467)
chr6 (51-180)||(27593148-27593277)
chr6 (51-249)||(27678876-27679074)
chr6 (65-242)||(26937038-26937215)
chr6 (193-249)||(2184360-2184416)
chr6 (193-249)||(2184970-2185026)
chr6 (51-142)||(26622906-26622997)
chr6 (51-142)||(26728884-26728975)
chr6 (51-146)||(27338227-27338322)
chr6 (51-146)||(27398967-27399062)
chr6 (51-249)||(27677673-27677871)
chr6 (125-225)||(24715586-24715689)
chr6 (51-180)||(26655919-26656048)
chr6 (51-180)||(26761890-26762019)
chr6 (75-140)||(28181068-28181133)
chr6 (75-140)||(28185320-28185385)
chr6 (58-146)||(25481679-25481767)
chr6 (58-146)||(25579656-25579744)
chr6 (52-175)||(29697460-29697583)
chr6 (95-249)||(26341993-26342147)
chr6 (64-146)||(28234507-28234589)
chr6 (52-113)||(26861547-26861608)
chr6 (52-113)||(26884094-26884155)
chr6 (51-140)||(28139471-28139560)
chr6 (58-146)||(26142802-26142890)
chr6 (193-249)||(28098428-28098484)
[»] chr2 (1 HSPs)
chr2 (19-249)||(17993743-17993973)
[»] scaffold1254 (1 HSPs)
scaffold1254 (23-158)||(67-202)
[»] scaffold0419 (1 HSPs)
scaffold0419 (23-158)||(7427-7562)
[»] scaffold0349 (2 HSPs)
scaffold0349 (23-158)||(3572-3707)
scaffold0349 (19-158)||(14505-14644)
[»] scaffold0277 (2 HSPs)
scaffold0277 (25-158)||(13782-13915)
scaffold0277 (40-146)||(4833-4939)
[»] chr5 (1 HSPs)
chr5 (61-183)||(16688951-16689073)
[»] scaffold0019 (1 HSPs)
scaffold0019 (64-146)||(58444-58526)
[»] chr4 (5 HSPs)
chr4 (23-245)||(5091017-5091239)
chr4 (28-114)||(18699581-18699667)
chr4 (65-114)||(18655658-18655707)
chr4 (51-114)||(18724266-18724329)
chr4 (65-114)||(18731685-18731734)
[»] scaffold0038 (1 HSPs)
scaffold0038 (64-146)||(34668-34750)
[»] scaffold0012 (1 HSPs)
scaffold0012 (73-175)||(241814-241916)
[»] chr8 (1 HSPs)
chr8 (163-240)||(31903893-31903970)
[»] chr1 (1 HSPs)
chr1 (65-113)||(268539-268587)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 51)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 27214315 - 27214543
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||  ||||||||||||||||||||||||||||    
T  27214315 ttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaagg 27214414  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    |||||||||||||||||||||||||| ||||||||| ||| |  ||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||    
T  27214415 agcttcagagaggtgacgaaatcacatcttcgctccacaagaaaattgaagactcgaggatttctgttattgtattctcagagaactatgctacttcttc 27214514  T
Q  219 attttgtctagatgaacttgtccatatca 247  Q
    ||||||| | || ||||||||||| ||||    
T  27214515 attttgtttggacgaacttgtccacatca 27214543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 27234913 - 27234685
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||  ||||||||||||||||||||||||||||    
T  27234913 ttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaagg 27234814  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    |||||||||||||||||||||||||| ||||||||| ||| |  ||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||    
T  27234813 agcttcagagaggtgacgaaatcacatcttcgctccacaagaaaattgaagactcgaggatttctgttattgtattctcagagaactatgctacttcttc 27234714  T
Q  219 attttgtctagatgaacttgtccatatca 247  Q
    ||||||| | || ||||||||||| ||||    
T  27234713 attttgtttggacgaacttgtccacatca 27234685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 26811407 - 26811637
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||||| ||||||||||   || ||||||||| ||||||| |||||||||| |||||  ||||||||||||||||||||||||||||    
T  26811407 ttcattagtttcaggggtatcgacactcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaagg 26811506  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||  |||||||||||||  |||||||||| ||||| ||    
T  26811507 agcttcagagaggtgacgaaatcacaccttcgctcctcaagagcattgaacactctaggattgccattattgtattctctgagaactatgcaacttcgtc 26811606  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
     |||||| ||||||| |||||||| ||||||    
T  26811607 gttttgtttagatgagcttgtccacatcatt 26811637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 26949559 - 26949789
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||    
T  26949559 ttcattagtttcagaggtaccgacactcgattcggtttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataagg 26949658  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    ||||||||| ||||||||||||||||||||| |||||||| || |||||||| || || |||||  |||| || || || ||| | |||||| |||||||    
T  26949659 agcttcagaaaggtgacgaaatcacaccttcactcctcaagagaattgaagaatcgagaattgccattatcgtcttttctaaggaatatgcttcttcttc 26949758  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
    ||||||| |||| ||||||||||||||||||    
T  26949759 attttgtttagacgaacttgtccatatcatt 26949789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 27665406 - 27665176
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||||||||||||||||   |||||||||||||| ||||| || |||||||||||||  |||||||  |||||||||||||||||||    
T  27665406 ttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaaggaatccacaccttcattgatgacaagg 27665307  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    ||||||  |  |||||||||||||||||||| ||||  || ||||||||||| || ||||||||  ||||| ||||||| ||||||||||||||||||||    
T  27665306 agcttccaactggtgacgaaatcacaccttcactccggaagagcattgaagaatcgaggattgccattattatattctctaagaactatgctacttcttc 27665207  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
    ||||||| |||||||||||||||| ||||||    
T  27665206 attttgtttagatgaacttgtccacatcatt 27665176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 25071557 - 25071787
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||| || ||||||||||||||||  |||||||  ||||| ||||||||||| |    
T  25071557 ttcattagtttcaggggtaccgacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaaag 25071656  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||||| || || |||||  |||| || ||||| ||  |||||||| |||||||    
T  25071657 agcttaagagaggtgacgaaatcacaccttcgctccgcaagagcattgaagattcgagaattgccattatcgtcttctctaaagactatgcttcttcttc 25071756  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
    ||||||| |||| ||||||||||| ||||||    
T  25071757 attttgtttagacgaacttgtccacatcatt 25071787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 26848558 - 26848788
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||| ||||||||| ||  | ||||||| ||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  26848558 ttcattagtttcaggggcaccgacactagattcagtttcactggtaatctctataaagctctttctgacaatggaatccgaaccttcattgatgacaagg 26848657  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    | |||||||| ||||| || |||||||||||||||||||| | |||||||||||| |||||| |  || ||||||||||  |||||||||| ||||||||    
T  26848658 atcttcagagtggtgatgagatcacaccttcgctcctcaagaacattgaagactcgaggatttccattcttgtattctctgagaactatgccacttcttc 26848757  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
     |||||| | || ||||||||||| ||||||    
T  26848758 gttttgtttggacgaacttgtccacatcatt 26848788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 26974950 - 26975180
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||  ||||||   | |||||||||||||||||    
T  26974950 ttcattagtttcagaggtaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacatcttcattgatgacaagg 26975049  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    ||||| | | ||| |||||||||||||||||||||||||| |||||||||||||| |||||| |  |||| || ||||| ||  |||||||| |||||||    
T  26975050 agcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagactcgaggattaccattatcgtcttctctaaagactatgcttcttcttc 26975149  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
    ||||||| | || ||||||||||| ||||||    
T  26975150 attttgtttggacgaacttgtccacatcatt 26975180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 26635588 - 26635818
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||| |||||||||| |  ||||||||||||||| ||||| ||||||||||||||||  ||||||   |||||||||||||||||||    
T  26635588 ttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaagg 26635687  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    ||||| | | ||| || ||||||||||||||||||||||| ||||||||||| || ||||||||  |||| || ||||| ||| | |||||| ||||||     
T  26635688 agcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttcttt 26635787  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
     |||||| | |||||||||||||| ||||||    
T  26635788 gttttgtttggatgaacttgtccacatcatt 26635818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 26741554 - 26741784
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||| |||||||||| |  ||||||||||||||| ||||| ||||||||||||||||  ||||||   |||||||||||||||||||    
T  26741554 ttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaagg 26741653  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    ||||| | | ||| || ||||||||||||||||||||||| ||||||||||| || ||||||||  |||| || ||||| ||| | |||||| ||||||     
T  26741654 agcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttcttt 26741753  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
     |||||| | |||||||||||||| ||||||    
T  26741754 gttttgtttggatgaacttgtccacatcatt 26741784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 26959063 - 26959294
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||| ||||||||||||  | ||||||||||||| ||||| ||||||||||||||||  ||||||   ||||||||||||||||| |    
T  26959063 ttcattagtttcaggggcaccgacactcgattcagtttcaccggtaacctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaag 26959162  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaa-agcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttctt 217  Q
    ||||| | | ||| || ||||||||||||||||| |||||| |||||||||||||| ||||||||  |||| || ||||| ||| | |||||| ||||||    
T  26959163 agcttaaaaaaggggatgaaatcacaccttcgcttctcaaagagcattgaagactcgaggattgccattatcgttttctctaaggaatatgcttcttctt 26959262  T
Q  218 cattttgtctagatgaacttgtccatatcatt 249  Q
    | |||| | | |||||||||||||| ||||||    
T  26959263 cgttttatttggatgaacttgtccacatcatt 26959294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 26617260 - 26617441
Alignment:
Q  55 ttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgctcc 154  Q
    |||||||| |||||||| |||||||||| |||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  26617260 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgctc- 26617358  T
Q  155 tcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccat 243  Q
          |||||||| |||| || |||||  || |||| ||||| ||  |||||||| |||||||||||||| |||||||||||||||||    
T  26617359 ------gcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtccat 26617441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 26723188 - 26723369
Alignment:
Q  55 ttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgctcc 154  Q
    |||||||| |||||||| |||||||||| |||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  26723188 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgctc- 26723286  T
Q  155 tcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccat 243  Q
          |||||||| |||| || |||||  || |||| ||||| ||  |||||||| |||||||||||||| |||||||||||||||||    
T  26723287 ------gcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtccat 26723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 27229134 - 27229257
Alignment:
Q  23 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagct 122  Q
    ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||  ||||||||||||||||| || ||    
T  27229134 ttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatct 27229233  T
Q  123 tcagagaggtgacgaaatcacacc 146  Q
    ||| ||||| ||||||||||||||    
T  27229234 tcaaagaggagacgaaatcacacc 27229257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 27698783 - 27698644
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||| ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||  ||||||||||||||||| |    
T  27698783 ttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatg 27698684  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    | ||||| ||||| || ||||||||||| || ||||||||    
T  27698683 atcttcaaagaggagatgaaatcacaccatcactcctcaa 27698644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 27725130 - 27724995
Alignment:
Q  23 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagct 122  Q
    ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||  ||||||||||||||||| || ||    
T  27725130 ttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatct 27725031  T
Q  123 tcagagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    ||| ||||| || ||||||||||| || ||||||||    
T  27725030 tcaaagaggagatgaaatcacaccatcactcctcaa 27724995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 28781043 - 28781176
Alignment:
Q  25 agtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttc 124  Q
    ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||  |||||||||||||||||| || ||||    
T  28781043 agttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 28781142  T
Q  125 agagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    | ||||| || ||||||||||| || ||||||||    
T  28781143 aaagaggagatgaaatcacaccatcactcctcaa 28781176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 28786182 - 28786315
Alignment:
Q  25 agtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttc 124  Q
    ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||  |||||||||||||||||| || ||||    
T  28786182 agttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 28786281  T
Q  125 agagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    | ||||| || ||||||||||| || ||||||||    
T  28786282 aaagaggagatgaaatcacaccatcactcctcaa 28786315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 28792303 - 28792436
Alignment:
Q  25 agtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttc 124  Q
    ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||  |||||||||||||||||| || ||||    
T  28792303 agttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 28792402  T
Q  125 agagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    | ||||| || ||||||||||| || ||||||||    
T  28792403 aaagaggagatgaaatcacaccatcactcctcaa 28792436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 27611285 - 27611152
Alignment:
Q  25 agtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttc 124  Q
    ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||  ||||||||||||||||| || ||||    
T  27611285 agttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 27611186  T
Q  125 agagaggtgacgaaatcacaccttcgctcctcaa 158  Q
      ||||| || ||||||||||| || ||||||||    
T  27611185 caagaggagatgaaatcacaccatcactcctcaa 27611152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 27718662 - 27718529
Alignment:
Q  25 agtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttc 124  Q
    ||||| ||||| || |||||||| | | |||| ||||| ||||||||||| |||||| |||||| ||||||||  ||||||||||||||||| || ||||    
T  27718662 agttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 27718563  T
Q  125 agagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    | ||||| || ||||||||||| || ||||||||    
T  27718562 aaagaggagatgaaatcacaccatcactcctcaa 27718529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 27531465 - 27531359
Alignment:
Q  40 gacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaa 139  Q
    |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||   ||||||||||||||||| || ||||| ||||| || ||||    
T  27531465 gacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgacaatgatcttcaaagaggagatgaaa 27531366  T
Q  140 tcacacc 146  Q
    |||||||    
T  27531365 tcacacc 27531359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 29825958 - 29826052
Alignment:
Q  52 ggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    ||||| ||||| |||||||||||||||||  |||||| |  ||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  29825958 ggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatcacacc 29826052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 31284185 - 31284313
Alignment:
Q  18 attcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaag 117  Q
    |||| ||||||||||||| |  ||||||||    ||||||||||| ||||||||||| |||||| |||||| ||||||||  |||||||||||||| |      
T  31284185 attccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagt 31284284  T
Q  118 gagcttcagagaggtgacgaaatcacacc 146  Q
    || ||||| ||||| || |||||||||||    
T  31284285 gaacttcaaagaggggatgaaatcacacc 31284313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 27604990 - 27604867
Alignment:
Q  23 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagct 122  Q
    ||||||| ||||| || |||||||||  |||||| ||||| ||||||||||| |||||| |||||| |||||| |  |||||||||||||| || || ||    
T  27604990 ttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaaaatgatct 27604891  T
Q  123 tcagagaggtgacgaaatcacacc 146  Q
    ||  ||||| || |||||||||||    
T  27604890 tcgaagaggagatgaaatcacacc 27604867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 26802346 - 26802467
Alignment:
Q  25 agtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttc 124  Q
    ||||| ||||| || ||||||||   |||||| || || ||||||||||| ||||||  ||||| ||||||||  ||||||||||||||||| || ||||    
T  26802346 agttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttc 26802445  T
Q  125 agagaggtgacgaaatcacacc 146  Q
    | ||||| || |||||||||||    
T  26802446 aaagaggagatgaaatcacacc 26802467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 27593277 - 27593148
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcg 150  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||   ||||||||||||||||| |  ||||| |||||  | ||||||||||| ||     
T  27593277 cggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaatcacaccatca 27593178  T
Q  151 ctcctcaaaagcattgaagactccaggatt 180  Q
    || |||||   ||||||||| || ||||||    
T  27593177 cttctcaaggccattgaagagtctaggatt 27593148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 249
Target Start/End: Original strand, 27678876 - 27679074
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcg 150  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||   |||||||||||| | || |  ||||| ||||| || ||||||||||| ||     
T  27678876 cggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaatcacaccatca 27678975  T
Q  151 ctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcatt 249  Q
    || |||||   ||||||||| || ||||||    ||  ||| || || |  ||||||||  |||||||||||||| | || ||||||||||| ||||||    
T  27678976 cttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcatt 27679074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 242
Target Start/End: Original strand, 26937038 - 26937215
Alignment:
Q  65 atctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcat 164  Q
    |||| ||||||||||||| |||    ||||| || ||||||||||||||||||||||| ||  |||| || ||||||||||| || ||  ||||    ||    
T  26937038 atctttacaaagctctttgtgattgtggaattcgcaccttcattgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaat 26937137  T
Q  165 tgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtcca 242  Q
    |||||| ||| |||||||  |   ||||||||| |  |||||||| ||||||||||||||| | || |||||||||||    
T  26937138 tgaagattccgggattgccatacctgtattctctatcaactatgccacttcttcattttgtttggacgaacttgtcca 26937215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 2184360 - 2184416
Alignment:
Q  193 ttctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcatt 249  Q
    |||||||||||||||||| |||||||||||||| | || ||||||||||| ||||||    
T  2184360 ttctcaaagaactatgcttcttcttcattttgtttggacgaacttgtccacatcatt 2184416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 2184970 - 2185026
Alignment:
Q  193 ttctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcatt 249  Q
    ||||||||| |||||||| |||||||||||||| | || ||||||||||||||||||    
T  2184970 ttctcaaaggactatgcttcttcttcattttgtttggacgaacttgtccatatcatt 2185026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 26622906 - 26622997
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatca 142  Q
    ||||||||| || ||||||||||| |||||| |||||| ||||||||  ||||||||||||||    || ||||| ||||| ||||||||||    
T  26622906 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatca 26622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 26728884 - 26728975
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatca 142  Q
    ||||||||| || ||||||||||| |||||| |||||| ||||||||  ||||||||||||||    || ||||| ||||| ||||||||||    
T  26728884 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatca 26728975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 27338322 - 27338227
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||| ||||| ||||||||||| ||||||  ||||| |||||||  |||||||||||||||||| || ||| | ||||| || |||| ||||||    
T  27338322 cggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacacc 27338227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 27399062 - 27398967
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||| ||||| ||||||||||| ||||||  ||||| |||||||  |||||||||||||||||| || ||| | ||||| || |||| ||||||    
T  27399062 cggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacacc 27398967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 27677871 - 27677673
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcg 150  Q
    |||||||||||| ||||||||||| ||||||  ||||| ||||||||  |||||||||||  |  | || ||||| ||||| || ||||||||||| ||     
T  27677871 cggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaatcacaccatca 27677772  T
Q  151 ctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcatt 249  Q
    || |||||   ||||||||| || ||||||    ||  ||| || || |  ||||||||  |||||||||||||| | || ||||||||||| ||||||    
T  27677771 cttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcatt 27677673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 24715586 - 24715689
Alignment:
Q  125 agagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaa---gaactatgctacttcttcatt 221  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||||||| |  |||||  ||||||| ||||| ||     |||||||| ||||||||||    
T  24715586 agagaggtgatgaaatcacatcttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcatt 24715685  T
Q  222 ttgt 225  Q
    ||||    
T  24715686 ttgt 24715689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 26655919 - 26656048
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcg 150  Q
    |||||| ||||| ||||||||||| ||||||  ||| | ||||||||  || |||||||||||||| || ||||  ||||| || ||||||||||| ||     
T  26655919 cggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatca 26656018  T
Q  151 ctcctcaaaagcattgaagactccaggatt 180  Q
    ||| | ||   ||||||||| |||||||||    
T  26656019 ctcgttaaggccattgaagaatccaggatt 26656048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 26761890 - 26762019
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcg 150  Q
    |||||| ||||| ||||||||||| ||||||  ||| | ||||||||  || |||||||||||||| || ||||  ||||| || ||||||||||| ||     
T  26761890 cggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatca 26761989  T
Q  151 ctcctcaaaagcattgaagactccaggatt 180  Q
    ||| | ||   ||||||||| |||||||||    
T  26761990 ctcgttaaggccattgaagaatccaggatt 26762019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 28181068 - 28181133
Alignment:
Q  75 agctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaat 140  Q
    |||||||| ||||| |||||||||||||||||| |||||||  ||||||||  ||||||| |||||    
T  28181068 agctctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaat 28181133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 28185320 - 28185385
Alignment:
Q  75 agctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaat 140  Q
    |||||||| ||||| |||||||||||||||||| |||||||  ||||||||  ||||||| |||||    
T  28185320 agctctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaat 28185385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 25481679 - 25481767
Alignment:
Q  58 accggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||||||||||| || ||||||  ||||| |||||| || || ||||||||||| || || ||||| ||||| || |||||||||||    
T  25481679 accggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaaaatgatcttcaaagaggagatgaaatcacacc 25481767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 25579656 - 25579744
Alignment:
Q  58 accggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||||||||||| || ||||||  ||||| |||||| || |||||| ||||||| || || ||||| ||||| || |||||||||||    
T  25579656 accggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgataatgatcttcaaagaggagatgaaatcacacc 25579744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 29697583 - 29697460
Alignment:
Q  52 ggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgc 151  Q
    |||||||||||| ||||| | |||||||||  |||||  ||| | ||||| ||||| |||| |||||||||| | | ||| || ||||||||||| || |    
T  29697583 ggtttcaccggttatctcaagaaagctcttgatgacaaaggagttcgaactttcatggatgccaaggagcttaaaaaaggcgaagaaatcacaccatcac 29697484  T
Q  152 tcctcaaaagcattgaagactcca 175  Q
    | ||||||   |||||||||||||    
T  29697483 ttctcaaagcaattgaagactcca 29697460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 26342147 - 26341993
Alignment:
Q  95 tccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtatt 194  Q
    |||| |||||||||||||| | |||||||||  |||||||| |||||||||  || ||  |||||  ||||||||| |||||||||    ||    | ||    
T  26342147 tccgcaccttcattgatgatagggagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggattttcattccaatttt 26342048  T
Q  195 ctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcatt 249  Q
    |||||  ||||||||| ||||||| |||||| | || ||||||||||| ||||||    
T  26342047 ctcaatcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcatt 26341993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 28234507 - 28234589
Alignment:
Q  64 aatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||||| | |||||||| | ||| ||||||||  |||||||||||||||| |||||||||  |||| || ||||| |||||    
T  28234507 aatctctatagagctctttgtcacaagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacacc 28234589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 26861547 - 26861608
Alignment:
Q  52 ggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatga 113  Q
    ||||| ||||||||||||||||| |||||| |||||| |||||| |  |||||||| |||||    
T  26861547 ggttttaccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatga 26861608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 26884094 - 26884155
Alignment:
Q  52 ggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatga 113  Q
    |||||||| || ||||||||||| |||||| || ||| ||||||||  ||||||||||||||    
T  26884094 ggtttcactggaaatctctacaaggctcttactaacaagggaatccacaccttcattgatga 26884155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 28139471 - 28139560
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaat 140  Q
    ||||||||| || ||||||||||||||||||  ||||   |||||||  || || |||||||| | |||||||||  |||||||||||||    
T  28139471 cggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaat 28139560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 26142802 - 26142890
Alignment:
Q  58 accggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||||||||||| || ||||||  ||||| |||||| || || ||||||||||| || || ||| | ||||| || |||||||||||    
T  26142802 accggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaatcacacc 26142890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 28098484 - 28098428
Alignment:
Q  193 ttctcaaagaactatgctacttcttcattttgtctagatgaacttgtccatatcatt 249  Q
    ||||| |||||||||||| ||||||  |||||| | |||||||||||||| ||||||    
T  28098484 ttctctaagaactatgcttcttctttgttttgtttggatgaacttgtccacatcatt 28098428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 17993973 - 17993743
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||||||||||||||||||||| ||||||   |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||| |    
T  17993973 ttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaag 17993874  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttc 218  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||  |||| || ||||||||| |||||||| |||||||    
T  17993873 agcttcagagaggtgatgaaatcacaccgtcgctcctcaagagcattgaagactcaagaattgcgattatcgtcttctcaaaggactatgcttcttcttc 17993774  T
Q  219 attttgtctagatgaacttgtccatatcatt 249  Q
    ||||||| |||| ||||||||||| ||||||    
T  17993773 attttgtttagacgaacttgtccacatcatt 17993743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 202 - 67
Alignment:
Q  23 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagct 122  Q
    ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||  |||||||||||||||||| || ||    
T  202 ttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatct 103  T
Q  123 tcagagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    ||| ||||| || ||||||||||| || ||||||||    
T  102 tcaaagaggagatgaaatcacaccatcactcctcaa 67  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 7427 - 7562
Alignment:
Q  23 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagct 122  Q
    ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||  |||||||||||||||||| || ||    
T  7427 ttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatct 7526  T
Q  123 tcagagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    ||| ||||| || ||||||||||| || ||||||||    
T  7527 tcaaagaggagatgaaatcacaccatcactcctcaa 7562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 3707 - 3572
Alignment:
Q  23 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagct 122  Q
    ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||  ||||||||||||||||| || ||    
T  3707 ttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatct 3608  T
Q  123 tcagagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    ||| ||||| || ||||||||||| || ||||||||    
T  3607 tcaaagaggagatgaaatcacaccatcactcctcaa 3572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 14644 - 14505
Alignment:
Q  19 ttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaagg 118  Q
    ||||| ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||  ||||||||||||||||| |    
T  14644 ttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatg 14545  T
Q  119 agcttcagagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    | ||||| ||||| || ||||||||||| || ||||||||    
T  14544 atcttcaaagaggagatgaaatcacaccatcactcctcaa 14505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 13915 - 13782
Alignment:
Q  25 agtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttc 124  Q
    ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||  |||||||||||||||||| || ||||    
T  13915 agttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 13816  T
Q  125 agagaggtgacgaaatcacaccttcgctcctcaa 158  Q
    | ||||| || ||||||||||| || ||||||||    
T  13815 aaagaggagatgaaatcacaccatcactcctcaa 13782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 4939 - 4833
Alignment:
Q  40 gacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaa 139  Q
    |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||  |||||||||||||||||| || ||||| ||||| || ||||    
T  4939 gacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaa 4840  T
Q  140 tcacacc 146  Q
    |||||||    
T  4839 tcacacc 4833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 16688951 - 16689073
Alignment:
Q  61 ggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgctcctcaaaa 160  Q
    |||||||| ||||||||||| | ||||| |||||||||   |||||||||||||||||| ||||||||||||||| |||||||||| || ||  ||||      
T  16688951 ggtaatctgtacaaagctctatgtgacaagggaatccgtgtcttcattgatgacaaggaacttcagagaggtgacaaaatcacaccatcacttatcaagg 16689050  T
Q  161 gcattgaagactccaggattgca 183  Q
      ||||||||||| |||||||||    
T  16689051 caattgaagactcaaggattgca 16689073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 58526 - 58444
Alignment:
Q  64 aatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||||||| |||||||| ||||| |||||||||||||||||| |||||||  ||||||||  ||||||||||||| |||||    
T  58526 aatctctacagagctctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgacgaaataacacc 58444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 5091239 - 5091017
Alignment:
Q  23 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagct 122  Q
    ||||||| || || |||||||||||   |||||| || || ||||||||  |||||||   || || |||||| |  ||||||||||||||||  |||||    
T  5091239 ttagttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtgtcaagggaattcacaccttcattgatgacagagagct 5091140  T
Q  123 tcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattt 222  Q
    |||| |||| ||| |||| ||||| || || |||||   |||| |||| || | |||||   |||| || ||||| ||  |||||||| ||||||| |||    
T  5091139 tcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgtcattatcgttttctctaaccactatgcttcttcttcgttt 5091040  T
Q  223 tgtctagatgaacttgtccatat 245  Q
    ||| |||||||||||||||||||    
T  5091039 tgtttagatgaacttgtccatat 5091017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 18699667 - 18699581
Alignment:
Q  28 ttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgac 114  Q
    |||||||| || ||||||||   |||||| || ||  ||||||||||||||||| |||||| ||||||||  |||||||||||||||    
T  18699667 ttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18699581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 18655707 - 18655658
Alignment:
Q  65 atctctacaaagctctttctgacatgggaatccgaaccttcattgatgac 114  Q
    ||||||||||||||||| |||||| ||||||||  |||||||||||||||    
T  18655707 atctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18655658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 18724329 - 18724266
Alignment:
Q  51 cggtttcaccggtaatctctacaaagctctttctgacatgggaatccgaaccttcattgatgac 114  Q
    |||||| || ||| |||||||||| |||||| |||||| ||||||||  |||||||||||||||    
T  18724329 cggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgac 18724266  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 18731734 - 18731685
Alignment:
Q  65 atctctacaaagctctttctgacatgggaatccgaaccttcattgatgac 114  Q
    ||||||||| ||||||| |||||| ||||||||  |||||||||||||||    
T  18731734 atctctacagagctcttactgacaagggaatccacaccttcattgatgac 18731685  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 34668 - 34750
Alignment:
Q  64 aatctctacaaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 146  Q
    |||||||| | |||||||| | ||| ||||||||  |||||||||||||||| |||||||||  |||| || ||||| |||||    
T  34668 aatctctatagagctctttgtcacaagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacacc 34750  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 241916 - 241814
Alignment:
Q  73 aaagctctttctgacatgggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgctcctcaaaagcattgaagact 172  Q
    |||||||||  |||||  ||||| ||||| ||||| |||||||||||||||   | |||||| ||||||||||| || || ||||||   ||||||||||    
T  241916 aaagctcttgatgacaaaggaattcgaactttcatggatgacaaggagcttagaaaaggtgaagaaatcacaccatcacttctcaaagcaattgaagact 241817  T
Q  173 cca 175  Q
    |||    
T  241816 cca 241814  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 31903893 - 31903970
Alignment:
Q  163 attgaagactccaggattgcagttattgtattctcaaagaactatgctacttcttcattttgtctagatgaacttgtc 240  Q
    |||||||| || ||||||||  |||||||  |||| || ||||||||| |||||||||||||  || |||||||||||    
T  31903893 attgaagagtctaggattgccattattgtgctctctaaaaactatgcttcttcttcattttgcttacatgaacttgtc 31903970  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 268587 - 268539
Alignment:
Q  65 atctctacaaagctctttctgacatgggaatccgaaccttcattgatga 113  Q
    |||||||||| |||||| |||||| ||||||||  ||||||||||||||    
T  268587 atctctacaaggctcttactgacaagggaatccacaccttcattgatga 268539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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