View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_low_20 (Length: 208)
Name: NF19088_low_20
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 21708878 - 21708701
Alignment:
| Q |
17 |
aactttgatgattgaaaatgtagaatccgaggtatttagtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgttggaataa |
116 |
Q |
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| T |
21708878 |
aactttgatgattgaaaatgtagaattcgaggtatttagtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgtttgaataa |
21708779 |
T |
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| Q |
117 |
agttggaaatttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctattgatctctattctgtg |
194 |
Q |
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| T |
21708778 |
agttggaaatttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctattgatctctattctgtg |
21708701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 21710226 - 21710072
Alignment:
| Q |
28 |
ttgaaaatgtagaatccgaggtattt--agtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgttggaat-aaagttggaa |
124 |
Q |
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||||||||||||||| |||||| ||| | ||||||| | |||||||| |||||| |||| ||| ||||||||| |||| ||| | ||| |||||||||| |
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| T |
21710226 |
ttgaaaatgtagaattcgaggtgttttcaatgtctcataatagttcatgaaagttgaagagagttaatcaatttagtaaatgtcgtaattaaagttggaa |
21710127 |
T |
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| Q |
125 |
at-ttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctat |
178 |
Q |
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| T |
21710126 |
atattgaattgacaaaatgtttaaggcataaatagttgagaatgcaaatttctat |
21710072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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