View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19088_low_3 (Length: 465)

Name: NF19088_low_3
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19088_low_3
NF19088_low_3
[»] chr1 (4 HSPs)
chr1 (115-462)||(40339016-40339351)
chr1 (13-77)||(40339364-40339428)
chr1 (299-356)||(27580775-27580832)
chr1 (168-217)||(40329382-40329431)
[»] chr5 (3 HSPs)
chr5 (299-370)||(34821930-34822001)
chr5 (311-368)||(15069810-15069867)
chr5 (311-355)||(33160714-33160758)
[»] chr6 (5 HSPs)
chr6 (311-356)||(18239269-18239314)
chr6 (299-346)||(19238571-19238618)
chr6 (318-366)||(18239165-18239213)
chr6 (366-401)||(21917386-21917421)
chr6 (303-349)||(2949695-2949741)
[»] chr8 (1 HSPs)
chr8 (299-356)||(25105740-25105797)
[»] chr4 (4 HSPs)
chr4 (304-361)||(8019987-8020044)
chr4 (299-364)||(14122792-14122856)
chr4 (299-344)||(29924365-29924410)
chr4 (304-368)||(8019432-8019496)
[»] chr7 (1 HSPs)
chr7 (366-399)||(43119252-43119285)
[»] chr3 (1 HSPs)
chr3 (360-404)||(54697926-54697970)
[»] chr2 (1 HSPs)
chr2 (304-356)||(3960880-3960932)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 115 - 462
Target Start/End: Complemental strand, 40339351 - 40339016
Alignment:
Q  115 tggaggtatcgctggttcagtttgtaaagcattgattacaactttgttttcttccaaaagatgccaaatgcatccacttatgttagggaatcatgtgtca 214  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40339351 tggaggtctcgctggttcagtttgtaaagcattgattacaactttgttttcttccaaaagatgccaagtgcatccacttatgttagggaatcatgtgtca 40339252  T
Q  215 tcaactcgatagttaagaaatggaggctttgtctcttaggctgtaatttcgtgatcaatacttgaggcaatttgcgtaaagttagagtagagatcatctc 314  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  40339251 tcaactcgatggttaagaaatggaggctttgtatcttgggctgtaatttcgtgatcaatacttgaggcagtttgcgtaaagttagagtagatatcatctc 40339152  T
Q  315 cattttctaaaataaatgacaatatccattactataattttgatgtataaatatatcatgtatttactacaaaactataataatggatatattgacattt 414  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||     ||||| ||     ||||||||||||||||  ||||||||||||    
T  40339151 cattttctaaaataaatgacaatatccattattatagttttgatgtataaat-----atgtaatt-----aaaactataataatgg--atattgacattt 40339064  T
Q  415 attttaagaaataaaaaggatcttaactcaacaagtcatccaaactcc 462  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  40339063 attttaagaaataaaaaggatcttaactcaccaagtcatccaaactcc 40339016  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 40339428 - 40339364
Alignment:
Q  13 aatattggtgtaaaaagtatcaggatctaacatataaaaaatctatttattcatttgttaaacat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40339428 aatattggtgtaaaaagtatcaggatctaacatataaaaaatctatttattcatttgttaaacat 40339364  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 27580832 - 27580775
Alignment:
Q  299 gagtagagatcatctccattttctaaaataaatgacaatatccattactataattttg 356  Q
    |||| |||||| |||  |||||||||||||||||||||| || |||||||||||||||    
T  27580832 gagttgagatcctctttattttctaaaataaatgacaatgtctattactataattttg 27580775  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 40329431 - 40329382
Alignment:
Q  168 ccaaaagatgccaaatgcatccacttatgttagggaatcatgtgtcatca 217  Q
    ||||||||||| |||||||||||||||| ||| ||||| |||||||||||    
T  40329431 ccaaaagatgctaaatgcatccacttatattaaggaattatgtgtcatca 40329382  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 34821930 - 34822001
Alignment:
Q  299 gagtagagatcatctccattttctaaaataaatgacaatatccattactataattttgatgtataaatatat 370  Q
    ||||| ||||| ||||||||||||||||||||||||||| | ||||| |||| ||||| |||||| ||||||    
T  34821930 gagtaaagatcctctccattttctaaaataaatgacaattttcattagtatagttttggtgtatagatatat 34822001  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 15069867 - 15069810
Alignment:
Q  311 tctccattttctaaaataaatgacaatatccattactataattttgatgtataaatat 368  Q
    |||| ||||||||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  15069867 tctctattttctaaaataaatgtcaatattcatttctatagttttgatgtataaatat 15069810  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 33160758 - 33160714
Alignment:
Q  311 tctccattttctaaaataaatgacaatatccattactataatttt 355  Q
    |||||||||||||||||||||| |||| |||||||||||| ||||    
T  33160758 tctccattttctaaaataaatggcaatgtccattactatagtttt 33160714  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 18239314 - 18239269
Alignment:
Q  311 tctccattttctaaaataaatgacaatatccattactataattttg 356  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||    
T  18239314 tctccattttctacaataaatgacaatatccattactatatttttg 18239269  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 19238571 - 19238618
Alignment:
Q  299 gagtagagatcatctccattttctaaaataaatgacaatatccattac 346  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  19238571 gagttgagatcctctccattttctataataaatgacaatatccattac 19238618  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 18239165 - 18239213
Alignment:
Q  318 tttctaaaataaatgacaatatccattactataattttgatgtataaat 366  Q
    |||||| |||||||||||||||||||||||||| ||||  |||||||||    
T  18239165 tttctataataaatgacaatatccattactatagttttagtgtataaat 18239213  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 21917421 - 21917386
Alignment:
Q  366 tatatcatgtatttactacaaaactataataatgga 401  Q
    |||||||||||||||||||||||||||| |||||||    
T  21917421 tatatcatgtatttactacaaaactatagtaatgga 21917386  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 2949741 - 2949695
Alignment:
Q  303 agagatcatctccattttctaaaataaatgacaatatccattactat 349  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||||    
T  2949741 agagatcatctccatttactataataaatgacaatgttcattactat 2949695  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 25105797 - 25105740
Alignment:
Q  299 gagtagagatcatctccattttctaaaataaatgacaatatccattactataattttg 356  Q
    |||| ||||| |||||||||||||||||||||||  || ||||||||||||| |||||    
T  25105797 gagttgagattatctccattttctaaaataaatggtaacatccattactatagttttg 25105740  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 8020044 - 8019987
Alignment:
Q  304 gagatcatctccattttctaaaataaatgacaatatccattactataattttgatgta 361  Q
    |||||| |||| ||||||||||||||||| |||| | |||||||||| ||||||||||    
T  8020044 gagatcctctcaattttctaaaataaatggcaatgttcattactatagttttgatgta 8019987  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 14122856 - 14122792
Alignment:
Q  299 gagtagagatcatctccattttctaaaataaatgacaatatccattactataattttgatgtataa 364  Q
    |||||||| || | |||||||  |||||||||||||||||| |||||||||||||||| |||||||    
T  14122856 gagtagagttcctttccatttcttaaaataaatgacaatat-cattactataattttgttgtataa 14122792  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 29924410 - 29924365
Alignment:
Q  299 gagtagagatcatctccattttctaaaataaatgacaatatccatt 344  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||    
T  29924410 gagtagagatattctccattttctaaaataaatgacaatgtccatt 29924365  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 8019432 - 8019496
Alignment:
Q  304 gagatcatctccattttctaaaataaatgacaatatccattactataattttgatgtataaatat 368  Q
    |||||| ||||||||| ||| |||||||  ||||||||||||||||| ||||   ||||||||||    
T  8019432 gagatcctctccatttcctataataaatagcaatatccattactatagtttttgggtataaatat 8019496  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 43119285 - 43119252
Alignment:
Q  366 tatatcatgtatttactacaaaactataataatg 399  Q
    |||||||||||||||||||||||||||| |||||    
T  43119285 tatatcatgtatttactacaaaactatagtaatg 43119252  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 54697926 - 54697970
Alignment:
Q  360 tataaatatatcatgtatttactacaaaactataataatggatat 404  Q
    |||| ||||||||| ||||||||||||||||||| ||| ||||||    
T  54697926 tatatatatatcatatatttactacaaaactatagtaacggatat 54697970  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 3960932 - 3960880
Alignment:
Q  304 gagatcatctccattttctaaaataaatgacaatatccattactataattttg 356  Q
    |||||| |||||||||||||  |||||||| ||| |||||||||||| |||||    
T  3960932 gagatcctctccattttctacgataaatgataatgtccattactatagttttg 3960880  T

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