View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19088_low_4 (Length: 433)
Name: NF19088_low_4
Description: NF19088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19088_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 138 - 418
Target Start/End: Original strand, 19890019 - 19890305
Alignment:
| Q |
138 |
tgtttatattccacatcaaagttgactacttgatcaaagttgcctacttggtcatat------tgattgcgttagaaaaggttgtgtgcagaaaagacag |
231 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19890019 |
tgtttattttccacatcaaagttgactacttgatcaaagttgcctacttggtcatataaatattgattgcgttagaaaaggttgtgtgcagaaaagacag |
19890118 |
T |
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| Q |
232 |
cacaatcacccttgtttcttttgttgtgtaattctctttcaataagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaat |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890119 |
cacaatcacccttgtttcttttgttgtgtaattctctttcaataagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaat |
19890218 |
T |
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| Q |
332 |
cagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttg |
418 |
Q |
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| T |
19890219 |
cagttagaggaatctactaattccacttatgatagaaaaacagaagtgaaaaattttgatgattcaaaagctggtgtcagaggtttg |
19890305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 19889928 - 19890032
Alignment:
| Q |
16 |
atattgtttaatttctaataaagacacactttgaataaaactttcacatgtttattatgtctttaatgaattggggtcctccgttattttatgtttatat |
115 |
Q |
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| T |
19889928 |
atattgtttaatttctaataaagacacactttgaataaaactttcacatgtttattatgtctttaatgaattggggtcctccgttattttatgtttattt |
19890027 |
T |
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| Q |
116 |
tccac |
120 |
Q |
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||||| |
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| T |
19890028 |
tccac |
19890032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 418
Target Start/End: Original strand, 19844322 - 19844448
Alignment:
| Q |
290 |
tggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttg |
389 |
Q |
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||||||||||| ||||||||||||||||||||||| |||| || |||| |||| ||||||||||||||||||||| | | |||||||||||||||| |
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| T |
19844322 |
tggtgttgttt--ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttg |
19844419 |
T |
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| Q |
390 |
atgattcaaaagctggtgtcagaggtttg |
418 |
Q |
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| T |
19844420 |
atgattcaaaagctggtgtgagaggtttg |
19844448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 418
Target Start/End: Original strand, 29462560 - 29462693
Alignment:
| Q |
285 |
tattttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagc |
384 |
Q |
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|||| ||||||||||| ||| |||||||||||||| ||||| |||| || ||| ||||||| | | ||| ||||||||||||| || | ||||| ||||| |
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| T |
29462560 |
tattctggtgttgtttgcctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaagttaaagc |
29462659 |
T |
|
| Q |
385 |
ttttgatgattcaaaagctggtgtcagaggtttg |
418 |
Q |
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| T |
29462660 |
ttttgatgattcaaaagttggtgtcaaaggtttg |
29462693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 397
Target Start/End: Complemental strand, 49465631 - 49465509
Alignment:
| Q |
275 |
aagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacgg |
374 |
Q |
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|||| ||||||||| |||| |||||| | |||||| ||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | | |
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| T |
49465631 |
aagacagtgctattctggttttgtttccttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctg |
49465532 |
T |
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| Q |
375 |
aagtgaaagcttttgatgattca |
397 |
Q |
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||||||||||||||||||||||| |
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| T |
49465531 |
aagtgaaagcttttgatgattca |
49465509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 49465915 - 49465849
Alignment:
| Q |
53 |
aaactttcacatgtttattatgtctttaatgaattggggtcctccgttattttatgtttatattccac |
120 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
49465915 |
aaactatcacgtgtttattatgtctttaatgaattggggtcct-ctttattttatgtttatattccac |
49465849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 8348970 - 8349034
Alignment:
| Q |
351 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggt |
415 |
Q |
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||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||| |
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| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggt |
8349034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 302 - 418
Target Start/End: Original strand, 1092841 - 1092957
Alignment:
| Q |
302 |
cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaag |
401 |
Q |
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|||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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| T |
1092841 |
cctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaag |
1092940 |
T |
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| Q |
402 |
ctggtgtcagaggtttg |
418 |
Q |
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||||||| ||||||| |
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| T |
1092941 |
taggtgtcaaaggtttg |
1092957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 25225169 - 25225105
Alignment:
| Q |
351 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggt |
415 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggt |
25225105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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