View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_high_15 (Length: 226)
Name: NF19089_high_15
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 33535131 - 33535252
Alignment:
| Q |
26 |
agtgttggtattgtggttgtttatgatcttcggatttttgtgatttgtgaaggtttatggtgttgatttgtatttctggaaagggttaaggttcatgtgt |
125 |
Q |
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| T |
33535131 |
agtgttagtattgtggttgtttatgatcttcggatttgtgtgatttgtgaaggtttatggtgttgatttgtatttctgaaaagggttaaggttcatgtgt |
33535230 |
T |
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| Q |
126 |
tcttgagattgttcatgatttt |
147 |
Q |
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| T |
33535231 |
tcttgagattgttcataatttt |
33535252 |
T |
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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 23983074 - 23983005
Alignment:
| Q |
82 |
atggtgttgatttgtatttctggaaagggttaaggttcatgtgttcttgagattgttcatgatttttgtg |
151 |
Q |
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| T |
23983074 |
atggtgttgattcgtatttttggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtg |
23983005 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 13273204 - 13273150
Alignment:
| Q |
97 |
atttctggaaagggttaaggttcatgtgttcttgagattgttcatgatttttgtg |
151 |
Q |
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| T |
13273204 |
atttttggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtg |
13273150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 27977069 - 27977020
Alignment:
| Q |
102 |
tggaaagggttaaggttcatgtgttcttgagattgttcatgatttttgtg |
151 |
Q |
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| T |
27977069 |
tggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtg |
27977020 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 18008371 - 18008322
Alignment:
| Q |
102 |
tggaaagggttaaggttcatgtgttcttgagattgttcatgatttttgtg |
151 |
Q |
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| T |
18008371 |
tggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtg |
18008322 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 19849313 - 19849278
Alignment:
| Q |
177 |
aaagaaagggtttttcgtgttggtgtatgattactg |
212 |
Q |
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| T |
19849313 |
aaagaaagggttttttgtgttggtgtatgattactg |
19849278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 19855349 - 19855314
Alignment:
| Q |
177 |
aaagaaagggtttttcgtgttggtgtatgattactg |
212 |
Q |
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| T |
19855349 |
aaagaaagggttttttgtgttggtgtatgattactg |
19855314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 36247238 - 36247203
Alignment:
| Q |
177 |
aaagaaagggtttttcgtgttggtgtatgattactg |
212 |
Q |
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| T |
36247238 |
aaagaaagggttttttgtgttggtgtatgattactg |
36247203 |
T |
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