View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_high_6 (Length: 472)
Name: NF19089_high_6
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 47405085 - 47404634
Alignment:
| Q |
17 |
tattactacacttgtttctcttaattatatgcttcttgttatatgttcattaaggaacaatcgtgctcaattttcttgtctaaagataagtagatttctt |
116 |
Q |
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| T |
47405085 |
tattaccacacttgtttatcttaattatatgcttcttgttatatgttcattaaggaacaatcgtgctcaattttcttgtctaaagataagtagatttctt |
47404986 |
T |
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| Q |
117 |
atagctttgagttttcaagaaccaccaaatcttttgctatggtcgaccaaactcaaacgtatgagatttagatttaagttctcaagaacctccaaatctt |
216 |
Q |
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| T |
47404985 |
atagcttcgagttttcaagaaccaccaaatcttttgctatggtcgaccaaactcaaacgtatgagatttagatttaagttctcaagaacctccaaatctt |
47404886 |
T |
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| Q |
217 |
ttgctataatcgaccaacctcaaatgcatgaactttagctttaagttcccaggaacaatctacaccaaccttgtatgagctttccatgtgtaacttctcg |
316 |
Q |
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| T |
47404885 |
ttgctataatcgaccaacctcaaatgcatgaactttagctttaagttcccaggaacaatctacaccaaccttgtatgagctttccatgtgtaacttctcg |
47404786 |
T |
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| Q |
317 |
ggtactcatcttgcactcaagaaaccaggacatagcagtaaaccttaacctgtaggaaattacacttggttattagtgattgatttgtttgcagaaatat |
416 |
Q |
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| T |
47404785 |
ggtactcatcttgcactcaagataccaggacatagcagtaaaccttaacctgtaggaaattacacttggttgttagtgattgatttgtttgcagaaatat |
47404686 |
T |
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| Q |
417 |
gactaatgaaattctcattcttgtgcctcttgcttctactgttcatctcact |
468 |
Q |
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| T |
47404685 |
gaccaatgacattctcattcttgtgcctcttgcttctactgttgatgtcact |
47404634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 47412989 - 47412935
Alignment:
| Q |
385 |
gttattagtgatt-gatttgtttgcagaaatatgactaatgaaattctcattctt |
438 |
Q |
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| T |
47412989 |
gttattagtgattagatttgtttgcagaaatatgatcaatggcattctcattctt |
47412935 |
T |
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