View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19089_low_1 (Length: 698)
Name: NF19089_low_1
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_1 |
 | |
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| [»] scaffold0305 (2 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 17 - 688
Target Start/End: Original strand, 24949832 - 24950503
Alignment:
| Q |
17 |
agaactaatattatgaataggatatgaattagtatcgatgtgatcgggtttttccaattgcaaatttgatcaaaccattttccaaatgcgatcaaactcg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949832 |
agaactaatattatgaataggatatgaattagtatcgatgtgatcgggtttttccaattgcaaatttgatcaaaccattttccaaatgcgatcaaactcg |
24949931 |
T |
|
| Q |
117 |
ataaaactttcattatcctgaagaaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcatgtattctactacttctttccttag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949932 |
ataaaactttcattatcctgaagaaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcatgtattctactacttctttccttag |
24950031 |
T |
|
| Q |
217 |
cggtggctcagctcggctcagcctcatcgacacaatttgtgtcgcttgatgccttagatggtcgagctgaatcaccgataagggatgaatgtagtgcatc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24950032 |
cggtggctcagctcggctcagcctcatcgacacaatttgtgtcgcttgatgcctcagatggtcgagctgaatcaccgataagggatgaatgtagtgcatc |
24950131 |
T |
|
| Q |
317 |
ttcggcagcagcggcatggaatacatatacaacatgttgaagtaagacgagtttgtgaaccggacagccaattgaacttctcctgttttcttcacacctg |
416 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
24950132 |
ttcggcaacagcggcatggaatacatatacaacatgttgaagtaagaagaatttgtgaacctgacagccaattgaacttctcctgttttcttcactcctg |
24950231 |
T |
|
| Q |
417 |
atggatttagtactaaaagagggtatgaatgtgtataaactctatcagtttcgagagtagataacctaattcttaccttccctatcctcgaatcctttga |
516 |
Q |
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| ||||||| |||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
24950232 |
acggatttaatactaaaagaggatatgaatgtgtgtaaactctatcggtttcaagagtagataaccgaattcttaccttccctatcctagaatcctttga |
24950331 |
T |
|
| Q |
517 |
tttgtctcctccatgtaaatggttgttatcgaagacacctattgtgataacagtagatggatcaaatacttcccaagtgtattgttcattccactttgga |
616 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24950332 |
tttgtctcctccatgtaaatgattgttatcaaagacacctattgtgataacagtagatggatcaaatacttcccaagtgtattgttcattccactttgga |
24950431 |
T |
|
| Q |
617 |
ctaaagctatcgacgattgtcctagttcggatccacttctgtccaaatttcgctacgcaataagcatctgtg |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24950432 |
ctaaagctatcgacgattgtcctagttcggatccacttctgtccgaatttcgctacgcaataagcatctgtg |
24950503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 505
Target Start/End: Original strand, 11577315 - 11577389
Alignment:
| Q |
431 |
aaaagagggtatgaatgtgtataaactctatcagtttcgagagtagataacctaattcttaccttccctatcctc |
505 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||| ||||| |||||||| ||||| ||||| || |||||| |
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| T |
11577315 |
aaaagaggatagtaatgagtataaactctatcagtttcaagagttgataaccttattctcacctttccaatcctc |
11577389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 11577024 - 11577076
Alignment:
| Q |
140 |
aaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcat |
192 |
Q |
| |
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||||||||||||||||| || | |||||||||||| |||||||||||||||| |
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| T |
11577024 |
aaattggctttgcttctccttagactccacatatggtaatccacatcaagcat |
11577076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 471
Target Start/End: Original strand, 36810050 - 36810496
Alignment:
| Q |
25 |
tattatgaataggatatgaattagtatcgatgtgatcgggtttttccaattgcaaatttgatcaaaccattttccaaatgcgatcaaactcgataaaact |
124 |
Q |
| |
|
|||||| |||| |||||||||||| | | |||||| ||||||||||||||||| ||||| |||||||| ||||||| || || || | ||||| |
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| T |
36810050 |
tattataaataagatatgaattagaactgttgtgatagggtttttccaattgcagatttggtcaaaccactttccaacagcaattaatccactcaaaacc |
36810149 |
T |
|
| Q |
125 |
ttcattatcctgaagaaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcatgtattctactacttctttccttagcggtggct |
224 |
Q |
| |
|
||| || ||||| |||||||||||||||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||| || || || || || |||| |
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| T |
36810150 |
cccatgattctgaaaaaattggctttgcttcttctcatactccacatgtgggaaccgacatctagcatatattccactacctcctttctcagtggcggct |
36810249 |
T |
|
| Q |
225 |
cagctcggctcagcctcatcgacacaatttgtgtcgcttgatgccttagatggtcgagctgaatcaccgataagggatgaatgtagtgcatcttcggcag |
324 |
Q |
| |
|
|||| ||||| || ||||| || ||||| || || ||||||||||| ||| ||||||||| | || | ||| || |||||||| |||||||| ||||| |
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|
| T |
36810250 |
cagcacggctaagtctcatggaaacaatctgagtagcttgatgcctcagactgtcgagctggctgacggttaatgggtgaatgtaatgcatcttgggcag |
36810349 |
T |
|
| Q |
325 |
cagcggcatggaatacatatacaacatgttgaagtaagacgagtttgtgaaccggacagccaattgaacttctcctgttttcttcacacctgatggattt |
424 |
Q |
| |
|
|| || | |||||||| | || |||||||| |||| ||| || |||| ||||||| ||||| |||||| |||||||||| || | ||||| |
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| T |
36810350 |
caatggatttgaatacatgtgcatcatgttgagcaaagaagagcaagtaaaccttacagccagttgaatttctcccattttcttcaccccagttggatga |
36810449 |
T |
|
| Q |
425 |
agtactaaaagagggtatgaatgtgtataaactctatcagtttcgag |
471 |
Q |
| |
|
|| |||| ||| || || |||||||| || |||| |||||| ||||| |
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| T |
36810450 |
agaactagaagtggataggaatgtgtgtagactcgatcagtctcgag |
36810496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 684
Target Start/End: Original strand, 36810578 - 36810721
Alignment:
| Q |
541 |
gttatcgaagacacctattgtgataacagtagatggatcaaatacttcccaagtgtattgttcattccactttggactaaagctatcgacgattgtccta |
640 |
Q |
| |
|
||||||||| ||||| ||||| || ||||| | |||||||| || |||||||| || || ||||||||| | || ||||||||||| ||| || || |
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|
| T |
36810578 |
gttatcgaatacaccaattgtaatgacagtgcacggatcaaaaacctcccaagtatactgctcattccacctcggtgcaaagctatcgatgatggttctt |
36810677 |
T |
|
| Q |
641 |
gttcggatccacttctgtccaaatttcgctacgcaataagcatc |
684 |
Q |
| |
|
|| || | ||| ||||||||| |||| ||||| ||||||||||| |
|
|
| T |
36810678 |
gtacgcacccatttctgtccatattttgctacacaataagcatc |
36810721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 134 - 684
Target Start/End: Original strand, 13224 - 13783
Alignment:
| Q |
134 |
ctgaagaaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcatgtattctactacttctttccttagcggtggctcagctcggc |
233 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| || ||| | ||||||||||| || || ||||| || || || ||||| |||||||| || | |
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| T |
13224 |
ctgaagaaattagccttgcttcttctcatactccacatgtgggaaccaacatcaagcatatactcaactacctcctttctcagcggcggctcagcgcgac |
13323 |
T |
|
| Q |
234 |
tcagcctcatcgacacaatttgtgtcgcttgatgccttagatggtcgagctgaatcaccgataagggatgaatgtagtgcatcttcggcagcagcggcat |
333 |
Q |
| |
|
||| |||||| || || || || || ||||||||||| | | ||||||||| | || | || || || || ||||||||||| |||| ||| || | |
|
|
| T |
13324 |
tcaacctcattgaaactatctgagtagcttgatgcctcaaactgtcgagctggctaacggtcaatgggtgtatatagtgcatctttggcaacagaggtag |
13423 |
T |
|
| Q |
334 |
ggaatacatatacaacatgttgaagtaagacgagtttgtgaaccggacagccaattgaacttctcctgttttcttcacacctgatggatttagtactaaa |
433 |
Q |
| |
|
|||||||| | || |||||||| |||| || ||||||| ||||||||||||| ||| || ||||||||||||| | ||| | || |||| |
|
|
| T |
13424 |
tgaatacatgtgcatcatgttgagcaaagaagaacaagtgaacctcacagccaattgaatttcacccattttcttcacaccagttgggtgaagaactagg |
13523 |
T |
|
| Q |
434 |
agagggtatgaatgtgtataaactctatcagtttcgagagtagataacctaattcttaccttccctatcctcgaatcctttga---------tttgtctc |
524 |
Q |
| |
|
|| || || |||||||| || |||| |||||| ||||| || || | | ||| |||||||| || ||||| ||||| |||| |||||| |
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|
| T |
13524 |
agtggataggaatgtgtgtacactcgatcagtctcgagtgtcgaaagacgaatccttaccttaccaatccttgaatcttttgcacctccagctttgtcag |
13623 |
T |
|
| Q |
525 |
ctccatgtaaatggttgttatcgaagacacctattgtgataacagtagatggatcaaatacttcccaagtgtattgttcattccactttggactaaagct |
624 |
Q |
| |
|
||||| ||||| ||||| || ||||| ||||| || |||||| | |||||||| || |||||||| ||||| ||||||||| | || ||||||| |
|
|
| T |
13624 |
gaccatgcaaatgacaattatcaaatacaccaattgtaatcacagtacaaggatcaaaaacctcccaagtatattgctcattccacctcggcataaagct |
13723 |
T |
|
| Q |
625 |
atcgacgattgtcctagttcggatccacttctgtccaaatttcgctacgcaataagcatc |
684 |
Q |
| |
|
||| | ||||||||| ||||| ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
13724 |
atcaatgattgtccttgttcgaatccacttctgcccatatttcgctacacaataagcatc |
13783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 13113 - 13189
Alignment:
| Q |
23 |
aatattatgaataggatatgaattagtatcgatgtgatcgggtttttccaattgcaaatttgatcaaaccattttcc |
99 |
Q |
| |
|
|||||||| || | ||||||||| || | || ||| || || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13113 |
aatattataaacaagatatgaatcagaaccgttgtaattggatttttccaattgcaaatttgatcgaaccattttcc |
13189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 3174 - 3262
Alignment:
| Q |
134 |
ctgaagaaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcatgtattctactacttctttccttagcggtgg |
222 |
Q |
| |
|
||||| ||||| |||||||||||||| | |||||| |||||||||||||||||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
3174 |
ctgaaaaaatttgctttgcttcttcttaaactccatatatgtgaatccacatcaagcatgtactcaactacttctttcctaagaggtgg |
3262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 8415817 - 8415893
Alignment:
| Q |
137 |
aagaaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcatgtattctactacttctttcct |
213 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| ||||| | |||||| || ||| | |||||||| |
|
|
| T |
8415817 |
aagaagttggctttgcttcttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcct |
8415893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 9938330 - 9938280
Alignment:
| Q |
565 |
aacagtagatggatcaaatacttcccaagtgtattgttcattccactttgg |
615 |
Q |
| |
|
|||||| || ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
9938330 |
aacagtcgaaggatcaaatactttccatgtgtattgttcattccactttgg |
9938280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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