View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_low_12 (Length: 341)
Name: NF19089_low_12
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 4952424 - 4952737
Alignment:
| Q |
14 |
gaaaataacataagtatatttatataggtgatnnnnnnnnn--tcagagacatgggttgggaccattataatatannnnnnnataagctcttagaccata |
111 |
Q |
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||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4952424 |
gaaaataacataagtatatttatctaggtgataaaaaaaaaaatcagaaacatgggttgggaccattataatatatttttttataagctcttagaccata |
4952523 |
T |
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| Q |
112 |
attacatcaaaactctacaattaaaataaacaccagcaatacactaccataaaaaggtaacatgctctagaggaggatgagtgagtaactgagaactcat |
211 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
4952524 |
attacatcaaaactctacgattaaaataaacaccagcaatacactaccataaaaaggtaacacgtcctagaggaggatgagtgagtaactgggaactcat |
4952623 |
T |
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| Q |
212 |
ggataacccgtagtgacctagtttgtttatctataaatatgtcgaaattggatgtatcactttgctttgtaaagtgatataatattatgttatattgacg |
311 |
Q |
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|||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4952624 |
ggataacccgtagtgacctaatttgtctatttataaatacgtcgaaattggatgtatcactttgctttgtaaagcgatataatattatgttatattgacg |
4952723 |
T |
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| Q |
312 |
aggatcaatataat |
325 |
Q |
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|||| ||||||||| |
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| T |
4952724 |
aggaccaatataat |
4952737 |
T |
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