View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19089_low_13 (Length: 308)
Name: NF19089_low_13
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 2483480 - 2483751
Alignment:
| Q |
8 |
aagaatatgatgaaataagtctttaaaataatggtttaaggacaaacttttttgcaataaataactcctcaaaactgtcttctcttcacttttatttaga |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2483480 |
aagaaaatgatgaaataagtctttaaaataatggtttaaggacaaacttttttgcaataaataactcctcaaatctgtcttctcttcacttttatttaga |
2483579 |
T |
|
| Q |
108 |
taataaagtcttggacttaactattgatattctatgaaatcctaacataggttgttcttattctatttttctttattttatatctgtacgtatttgtatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2483580 |
taataaagtcttggacttaactattgatattctatgaaaccc----------tgttcttattctatttttctttattttatatct----gtatttgtatt |
2483665 |
T |
|
| Q |
208 |
gttaacatggtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttt |
293 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2483666 |
gttaacatggtatcaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttt |
2483751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 2479191 - 2479289
Alignment:
| Q |
197 |
gtatttgtattgttaacatggtatgaagagcatggttcgatccgctt--gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttt |
293 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2479191 |
gtatatgtgttgttaacattgtatgaagagcatggtttgatcctcttttgaaccactaatcgtttccaccgtcgaattccaaaagcttgggattgtttt |
2479289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 1175506 - 1175437
Alignment:
| Q |
217 |
gtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttggga |
286 |
Q |
| |
|
|||| ||||| |||||| |||| |||||||||||| ||||||| || ||||||| |||||||||||||| |
|
|
| T |
1175506 |
gtatcaagagtatggtttgatcgtcttgaaccactagtcgcttccgctgtcgaatcccaaaagtttggga |
1175437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 24135082 - 24135127
Alignment:
| Q |
198 |
tatttgtattgttaacatggtatgaagagcatggttcgatccgctt |
243 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| ||||||||| |
|
|
| T |
24135082 |
tatttgtattgttaagatggtatcaagagcgtggtttgatccgctt |
24135127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 3950617 - 3950697
Alignment:
| Q |
204 |
tattgttaacatggtatgaagagcatggttcgatccg-cttgaaccactaatcgcttctgccgtcgaattccaaaagtttg |
283 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||| ||||||||||| || ||||||| |||||| |||||||||| |
|
|
| T |
3950617 |
tattgttaacatggtatcgaaagcatggtttgatccgccttgaaccacttgtcacttctgctatcgaatctcaaaagtttg |
3950697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University