View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_low_2 (Length: 534)
Name: NF19089_low_2
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_2 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 525
Target Start/End: Original strand, 110804 - 111312
Alignment:
| Q |
17 |
aagatatgccaagagtaaaggttttagctttcgcatgggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110804 |
aagatatgccaagagtaaaggttttagctttcgcatgggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattg |
110903 |
T |
|
| Q |
117 |
ttacaactgtgcgcaggaaattatcggagaataatagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
110904 |
ttacaactgtgcgcaggaaattatcggagaataatagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggctt |
111003 |
T |
|
| Q |
217 |
ttctttagattataggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
111004 |
ttctttagattataggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaa |
111103 |
T |
|
| Q |
317 |
ctctaaaacacttgttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgatagtg |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
111104 |
ctctaaaacacttgttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagtg |
111203 |
T |
|
| Q |
417 |
gattattttgtgtctttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggt |
516 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
111204 |
gattattttgtgtctttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggt |
111303 |
T |
|
| Q |
517 |
gagtattat |
525 |
Q |
| |
|
|| |||||| |
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|
| T |
111304 |
gaatattat |
111312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 48772397 - 48772453
Alignment:
| Q |
56 |
taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
112 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||| |
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|
| T |
48772397 |
taaatcaagaacggatggtagggtaattggtcaagagattctttgtttaaaggaggg |
48772453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 30 - 525
Target Start/End: Complemental strand, 20647049 - 20646554
Alignment:
| Q |
30 |
agtaaaggttttagctttcgcatgggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcg |
129 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20647049 |
agtataggttttagctttcgcatgggtaaatcaagaacaaatggtatgataattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcg |
20646950 |
T |
|
| Q |
130 |
caggaaattatcggagaataatagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattat |
229 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20646949 |
caggaaattatcggaaaataatagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattat |
20646850 |
T |
|
| Q |
230 |
aggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaaaacactt |
329 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20646849 |
aggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaaaacgctt |
20646750 |
T |
|
| Q |
330 |
gttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgatagtggattattttgtgt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20646749 |
gttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagtggattattttgtgt |
20646650 |
T |
|
| Q |
430 |
ctttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgagtattat |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20646649 |
ctttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatattat |
20646554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 19329068 - 19329124
Alignment:
| Q |
56 |
taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
19329068 |
taaatcaagaacgaatggtatggtaattggtcaagagattctttgttcaaaggaggg |
19329124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 350 - 527
Target Start/End: Original strand, 1415 - 1592
Alignment:
| Q |
350 |
ttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgatagtggattattttgtgtctttatgtggtgatgatgct |
449 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||| ||| || | ||||||||| || |||||||||| | |
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|
| T |
1415 |
ttccatcaatggatttggtttcatgtaaatcttaattttcttttattcttcaatagttatgacagtaagttctgttgtgtcttcatacggtgatgatgat |
1514 |
T |
|
| Q |
450 |
tataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgagtattatct |
527 |
Q |
| |
|
||| |||||| | || || |||||| ||||||||||||| |||||||||||||| ||| | |||||| |||||||| |
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|
| T |
1515 |
tatctttcctttgctgctgagagtgtttttgtaaaatctggaagattataaggagctgctatgtggtgaatattatct |
1592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 63935 - 63991
Alignment:
| Q |
56 |
taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
112 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| ||| |||||||||||||||| |
|
|
| T |
63935 |
taaatcaagaacgaatggtattgtgattggtcaagaaattctttgttcaaaggaggg |
63991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 22638972 - 22639028
Alignment:
| Q |
56 |
taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
112 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| |||||||||||||||| |
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|
| T |
22638972 |
taaatcaagaacaaatggattgataattggtcaggagattctttgttcaaaggaggg |
22639028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 44886103 - 44886051
Alignment:
| Q |
60 |
tcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
112 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
44886103 |
tcaagaacaaacggtatgataattggtcaagaaattctttgttcaaaggaggg |
44886051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 16080294 - 16080351
Alignment:
| Q |
56 |
taaatcaagaacaaatggtatggtaa-ttggtcaagagattgtttgttcaaaggaggg |
112 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
16080294 |
taaatcaagaacggatggtagggtaaattggtcaagagattctttgttctaaggaggg |
16080351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 38590280 - 38590228
Alignment:
| Q |
56 |
taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaagg |
108 |
Q |
| |
|
||||||||||||| |||| || |||||||||| |||||| |||||||||||| |
|
|
| T |
38590280 |
taaatcaagaacagatggattgataattggtcaggagattctttgttcaaagg |
38590228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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