View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_low_4 (Length: 481)
Name: NF19089_low_4
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 465
Target Start/End: Original strand, 38964936 - 38965395
Alignment:
| Q |
5 |
ggtagataatactttaagatttgtatattctgatgaacttcattttaaactttatattcataaaaataaggacataaatttatctaatcaatgacggttg |
104 |
Q |
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| T |
38964936 |
ggtaaataatattttaaaatttgtatattccgatgaacttcattttaaactttatattcataaaaataaggacataaatttatctaaccaatgaaggttg |
38965035 |
T |
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| Q |
105 |
ccacatatctttcactcatataagtgctcacttgaaaggttataagtaaacttcatcgatgattctttataacattttataaaaaattaatgatattatt |
204 |
Q |
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| T |
38965036 |
ccacatatcttccactcatataagtgttcacttaaaaagttataagcaaacttcatcgatgattcttcgtatcattttataaaaaattaatgatattatt |
38965135 |
T |
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| Q |
205 |
acatcatcttctctatttctatctctcttatgatgtataagagatcaggatctctcaagtg-nnnnnnnnnnnnncttaaaaggaaataatgtgagaata |
303 |
Q |
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| T |
38965136 |
acatcatcttctctatttctatctctcttatgatgtataagagattaggatctctcaagtgacaaaaagaaaaaactt--aaggaaataatgtgagaata |
38965233 |
T |
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| Q |
304 |
ttgaccactgaggggatactatttgaaattttaaaatggggacaggttgattaatatacattgtttaatggttgagatgtgaaaattgagtaaacacgag |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38965234 |
ttgaccactgaggggatactatttgaaattttaaaatggagacaagttgattaatatacattgtttaatggttgagatgtgaaaattgagtaaacacgag |
38965333 |
T |
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| Q |
404 |
nnnnnnncaatggagataatccatttcgtgtataagaggtatagggtatccacccatattct |
465 |
Q |
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| T |
38965334 |
aaaaaaacaatggagataatccatttcgtgtataagaggtctagggtatccacccatattct |
38965395 |
T |
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