View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_low_5 (Length: 475)
Name: NF19089_low_5
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 46 - 459
Target Start/End: Original strand, 38747743 - 38748153
Alignment:
| Q |
46 |
tgaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaatcgaagaaccatagcgt |
145 |
Q |
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| T |
38747743 |
tgaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaattgaagaaccgtagcgt |
38747842 |
T |
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| Q |
146 |
gaaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggag |
245 |
Q |
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| T |
38747843 |
gaaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggag |
38747942 |
T |
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| Q |
246 |
aattattagcaccattacca------ttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagctt |
339 |
Q |
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| T |
38747943 |
aattattagcaccattaccattaccgttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagctt |
38748042 |
T |
|
| Q |
340 |
gttatttttcttgttgcatgaaaaatgttcatttgaagatggagaagatgatgtaattggaaggattcttaattgacgaggagtgtgtgcaaagaaacaa |
439 |
Q |
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| T |
38748043 |
gttatttttcttgttgcatgaaaaatgttcattt---------gaagatgatgtaactggaaggattcttaattgacgaggagtgtgtgcaaagaaacaa |
38748133 |
T |
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| Q |
440 |
acttttctcttacagttttt |
459 |
Q |
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| T |
38748134 |
acttttctcttacagttttt |
38748153 |
T |
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