View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_low_8 (Length: 394)
Name: NF19089_low_8
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 43484923 - 43485289
Alignment:
| Q |
18 |
atatttgtacgaagggtacctctgaaagatcctatcatgtttgttagagtacataatataccggctaattaattcgtaaaatttgtatactttctaataa |
117 |
Q |
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| T |
43484923 |
atatgtgtacgaagggtacctcagaaagatcctatcatgtttgttagagtacataatataccggctaattaattcgtaaaatttgtatactttctaataa |
43485022 |
T |
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| Q |
118 |
tttcaagtattgtttaaaaaacaaatatttt-----ctattattaataatgaaagataatcacaaaaacaagcctatgcttgaaccctttgcacatattt |
212 |
Q |
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| T |
43485023 |
tttcaagtattgtttaaaaaacaaatattttcttttctattattaataatgaaagataatcacaaaaacaagcctatgcttgaaccctttacacatattt |
43485122 |
T |
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| Q |
213 |
caattttatatacgaattaaaagtgtagtccttttcttcaatttgtagatagactcaaaataaaagcacaccaaaatgcgagagtacgtaaagttaacta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43485123 |
caattttatatacgaattaaaagtgtagtccttttcttcaatttgtagatagactcaaaataaaagcactccaaaatgcgagagtacgtaaagttaacta |
43485222 |
T |
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| Q |
313 |
aaataaagtcaccaagtacacaacaac-aaaaaattcagaatttaaaagtgattattattaagaaag |
378 |
Q |
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| T |
43485223 |
aaataaagtcaccaagtacacaacaacaaaaaaattcagaatttaaaagtgattattattaagaaag |
43485289 |
T |
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