View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19089_low_9 (Length: 379)
Name: NF19089_low_9
Description: NF19089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19089_low_9 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 157 - 366
Target Start/End: Complemental strand, 31797013 - 31796804
Alignment:
| Q |
157 |
tataaagtttaattgatctgtattaattcaatagtgaatatcttgttcaaaattgaattagtataatttcatattgtttacttagtttgtccttattgca |
256 |
Q |
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| T |
31797013 |
tataaagtttaattgatctgtattaattcaatagtgaatatcttgttcaaaattgaattagtataatttcatatcgtttacttagtttgtccttattgca |
31796914 |
T |
|
| Q |
257 |
attgtaccattttcaacagtcaagcaaatatacaacaagaatttcaaaccgtgcatgttcttgctcaaagtttttaagagggagtctattcacctcctct |
356 |
Q |
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| T |
31796913 |
attgtaccattttcaacagtcaagcaaatatacaacaagaatttcaaaccgtgcatgttcctgctcaaagtttttaagagggagtctattcacctcctct |
31796814 |
T |
|
| Q |
357 |
atagattcat |
366 |
Q |
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|||||||||| |
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| T |
31796813 |
atagattcat |
31796804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 31797483 - 31797444
Alignment:
| Q |
38 |
taataatcttgagttatttgaatccatatacttctatctt |
77 |
Q |
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| T |
31797483 |
taataatcttgagttatttgaatccatatactactatctt |
31797444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 29928219 - 29928320
Alignment:
| Q |
161 |
aagtttaattgatctgtattaattcaatagtgaatatcttgttcaaaattgaattagtataatttcatattgtttacttagtttgtccttattgcaattg |
260 |
Q |
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| T |
29928219 |
aagtttgattgatctatgataatttaattgtgaatctcttgctcaacattgaattagtatattttcatattgtttacttagtttatccttattacaattg |
29928318 |
T |
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| Q |
261 |
ta |
262 |
Q |
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|| |
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| T |
29928319 |
ta |
29928320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 10222 - 10301
Alignment:
| Q |
190 |
gtgaatatcttgttcaaa-attgaattagtataatttcatattgtttacttagtttgtccttattgcaattgtaccattt |
268 |
Q |
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|||||||||||||||||| |||||||||||||||| || |||| |||||||||||| || |||||||||||||||||||| |
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| T |
10222 |
gtgaatatcttgttcaaacattgaattagtataatatcttattatttacttagtttatcattattgcaattgtaccattt |
10301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 10590237 - 10590190
Alignment:
| Q |
233 |
tttacttagtttgtccttattgcaattgtaccattttcaacagtcaag |
280 |
Q |
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| T |
10590237 |
tttacttagtttatccttattgcaattgtatcatttccaatagtcaag |
10590190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 31639426 - 31639505
Alignment:
| Q |
180 |
taattcaatagtgaatatcttgttcaaaattgaattagtataatttcatattgtttacttagtttgtccttattgcaatt |
259 |
Q |
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|||||| ||||||| | ||||||| || ||| |||||||||||| || |||||||| ||||||| ||| |||||||||| |
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| T |
31639426 |
taattcgatagtgagtctcttgtttaacattaaattagtataataacacattgtttagttagtttatccatattgcaatt |
31639505 |
T |
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