View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1908_low_2 (Length: 355)

Name: NF1908_low_2
Description: NF1908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1908_low_2
NF1908_low_2
[»] chr2 (24 HSPs)
chr2 (21-342)||(10372259-10372580)
chr2 (20-337)||(10353515-10353841)
chr2 (68-337)||(10348185-10348454)
chr2 (72-208)||(10336367-10336503)
chr2 (70-210)||(9316558-9316698)
chr2 (57-300)||(9321407-9321659)
chr2 (63-206)||(8572958-8573101)
chr2 (23-210)||(9283603-9283790)
chr2 (68-210)||(9357710-9357852)
chr2 (138-210)||(9275051-9275123)
chr2 (68-295)||(9329035-9329271)
chr2 (68-176)||(7115110-7115218)
chr2 (238-300)||(9357614-9357676)
chr2 (141-209)||(12005658-12005726)
chr2 (59-210)||(9292458-9292609)
chr2 (237-300)||(10336275-10336338)
chr2 (244-300)||(9283833-9283889)
chr2 (238-300)||(9292359-9292421)
chr2 (140-196)||(8579032-8579088)
chr2 (141-188)||(11987021-11987068)
chr2 (143-186)||(16269456-16269499)
chr2 (141-210)||(9060666-9060735)
chr2 (238-295)||(9060772-9060829)
chr2 (242-295)||(9274948-9275001)
[»] chr8 (1 HSPs)
chr8 (72-209)||(41966185-41966322)
[»] chr4 (1 HSPs)
chr4 (50-337)||(26575267-26575563)
[»] chr3 (2 HSPs)
chr3 (56-197)||(37463041-37463182)
chr3 (236-300)||(37462929-37462993)
[»] scaffold0667 (1 HSPs)
scaffold0667 (68-293)||(4921-5149)
[»] chr1 (1 HSPs)
chr1 (239-300)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 10372580 - 10372259
Alignment:
Q  21 aacaccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttca 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10372580 aacaccagcaacattgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttca 10372481  T
Q  121 ttaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372480 ttaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccc 10372381  T
Q  221 cacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagc 320  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10372380 cacaatcagagcctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaagc 10372281  T
Q  321 actttttatgatccacaggttc 342  Q
    ||||||||||||||||| ||||    
T  10372280 actttttatgatccacatgttc 10372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 10353841 - 10353515
Alignment:
Q  20 caacaccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttc 119  Q
    ||||| || ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||  | | ||||||    
T  10353841 caacagcaccaacatcgatcctttcaagggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttc 10353742  T
Q  120 attaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct-- 214  Q
    |   | |||   | |||||| ||||||||| | |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| ||||   ||||      
T  10353741 acgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctcc 10353642  T
Q  215 ----tgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcga 310  Q
        ||||  | | | |   | || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  ||||    
T  10353641 aatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcga 10353542  T
Q  311 ccaccaaagcactttttatgatccaca 337  Q
     |  |||| | ||||||||||||||||    
T  10353541 tctacaaaaccctttttatgatccaca 10353515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 68 - 337
Target Start/End: Complemental strand, 10348454 - 10348185
Alignment:
Q  68 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 167  Q
    |||||||||||||||||||||||||||||||||||  ||   | ||| |||||   | |||    ||| ||| ||||||||| |||||||||||||||||    
T  10348454 tatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacc 10348355  T
Q  168 cgtaaacatagggttatcccttttctccctcttcctattcctattcttgac-cccacaatcaaagcctccttatgtgttcatggcttcggttttgattct 266  Q
    |||||||||    ||||||||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| ||||| |||||||||||||||       
T  10348354 cgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaa 10348256  T
Q  267 ttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 337  Q
     ||||||| |||||||||||||||||||| ||| ||||| |||| |  || | | ||||||||||||||||    
T  10348255 atatccggtgattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccaca 10348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 10336503 - 10336367
Alignment:
Q  72 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 171  Q
    |||||||| || |||||||||||||||||||| ||| || ||||||||| ||||||||    | ||||||||||| ||||||| || |||| || |||||    
T  10336503 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatcctaccatccgta 10336404  T
Q  172 aacatagggttatcccttttctccctcttcctattcc 208  Q
    ||||| || ||||||||| ||||||||||||||||||    
T  10336403 aacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 9316698 - 9316558
Alignment:
Q  70 tcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccg 169  Q
    ||||||||||||||||||| |||||||| ||||| ||  || ||||||||||  | ||||  | | |||| ||||||||| |||||||||||||||||||    
T  9316698 tcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccg 9316599  T
Q  170 taaacatagggttatcccttttctccctcttcctattccta 210  Q
    ||||||| |  |||||||||| || |||||| |||| ||||    
T  9316598 taaacatcgtattatccctttccttcctcttgctatcccta 9316558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 300
Target Start/End: Complemental strand, 9321659 - 9321407
Alignment:
Q  57 accatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 156  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||| ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  9321659 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 9321560  T
Q  157 accctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attcttgacccc-acaa--tcaaa-gc--ctccttatgtgttca 247  Q
    |||||| ||| ||||| ||| |  | |||||||| || ||||||||||| |||   ||| | ||  || ||||  ||||  ||  || |||||| |||||    
T  9321559 accctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttca 9321460  T
Q  248 tggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 300  Q
    ||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9321459 tggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9321407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 8572958 - 8573101
Alignment:
Q  63 actcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaacccta 162  Q
    |||| |||||||||||||||||||||||||||||| || || ||   | ||||||| | | | |||  |||| ||||  ||||| || ||||||||||||    
T  8572958 actcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaacccta 8573057  T
Q  163 acacccgtaaacatagggttatcccttttctccctcttcctatt 206  Q
    ||||||||||||||    ||||||||||||||||||||||||||    
T  8573058 acacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 9283603 - 9283790
Alignment:
Q  23 caccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcatt 122  Q
    ||||| ||||||||| ||||||  | |||||| || || | ||| ||| |||||||||||||||||||||||||||| ||| |||  | | ||||| |      
T  9283603 caccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacg 9283702  T
Q  123 aacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 210  Q
     | ||    ||| | | |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  9283703 catccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 9357852 - 9357710
Alignment:
Q  68 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 167  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||   | |||   | | |||| |||||| || ||||||||| ||||| |    
T  9357852 tatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatc 9357753  T
Q  168 cgtaaacatagggttatcccttttctccctcttcctattccta 210  Q
    |||||||||    |||||||||| |||||||||||||| ||||    
T  9357752 cgtaaacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 9275123 - 9275051
Alignment:
Q  138 aatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 210  Q
    |||||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  9275123 aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 68 - 295
Target Start/End: Complemental strand, 9329271 - 9329035
Alignment:
Q  68 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 167  Q
    |||||||||||| ||||||||| | || |||||| | ||| || ||||||| |   |||||   | |||||| ||||||||| |||||||||||||||||    
T  9329271 tatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacc 9329172  T
Q  168 cgtaaacatagggttatcccttttctccctcttcctattccta---ttcttgacccc----acaatcaaagc--ctccttatgtgttcatggcttcggtt 258  Q
    ||||||||| |  |||||||||| || |||||| |||| ||||   |||||||  |     |||  ||  ||  ||||||||| ||||| || |||||||    
T  9329171 cgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggtt 9329072  T
Q  259 ttgattctttatccggcgattacaaactcctcagaat 295  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9329071 ttgatcctttatccggtgattacaaactcctcagaat 9329035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 7115110 - 7115218
Alignment:
Q  68 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 167  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| |   | |||  | || | | |||||||||| |||||||| ||||||||    
T  7115110 tatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacc 7115209  T
Q  168 cgtaaacat 176  Q
    |||||||||    
T  7115210 cgtaaacat 7115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  238 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 300  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q  141 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 209  Q
    |||||||| |||||||||||||||| |||||||||| || ||||||||  ||||||| |||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 9292609 - 9292458
Alignment:
Q  59 catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 158  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||  || || ||   ||||   | ||||  | ||| || ||||||||| ||| ||||    
T  9292609 catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac 9292510  T
Q  159 cctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 210  Q
    |||||||| | ||||||| || |||||||||||||||||||| |||| ||||    
T  9292509 cctaacactcataaacatcggattatcccttttctccctcttgctatcccta 9292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  237 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 300  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 9283833 - 9283889
Alignment:
Q  244 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 300  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctctt 9283889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 9292421 - 9292359
Alignment:
Q  238 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 300  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 9292359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q  140 tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc 196  Q
    ||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 11987021 - 11987068
Alignment:
Q  141 gaaatcacattctggaaccctaacacccgtaaacatagggttatccct 188  Q
    |||||| | ||||||||||||||||||||||||||| || ||||||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q  143 aatcacattctggaaccctaacacccgtaaacatagggttatcc 186  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  16269499 aatcacattctggaaccctaacacctgtaaacattggattatcc 16269456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 9060666 - 9060735
Alignment:
Q  141 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 210  Q
    |||| |||| ||||||||||||||||||| ||| || ||   ||||||||| ||||||||||||| ||||    
T  9060666 gaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta 9060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 9060772 - 9060829
Alignment:
Q  238 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 295  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaat 9060829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  242 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 295  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 41966185 - 41966322
Alignment:
Q  72 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 171  Q
    |||||||||||||||||||||  ||||||||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||||||| | |||    
T  41966185 ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 41966284  T
Q  172 aacatagggttatcccttttctccctcttcctattcct 209  Q
    ||||| || ||||||||||||||||| |||||||||||    
T  41966285 aacatcggattatcccttttctccctattcctattcct 41966322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 337
Target Start/End: Complemental strand, 26575563 - 26575267
Alignment:
Q  50 taacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcaca 149  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | ||    | |||||| |||||| ||    
T  26575563 taacaacacccttactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgca 26575464  T
Q  150 ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgaccccac-aatcaaagcctcctta 239  Q
     ||||||||||| ||||| ||||| || || |||||||||||||||||||||| || ||||   ||||      ||||  | | ||||   || | ||||    
T  26575463 atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggc-tgctta 26575365  T
Q  240 tgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 337  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |  |||| | ||||||||||||||||    
T  26575364 tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccaca 26575267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 37463182 - 37463041
Alignment:
Q  56 caccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgg 155  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| || |||||||||   | |||   | | |||| ||||||||| |||||    
T  37463182 caccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgg 37463083  T
Q  156 aaccctaacacccgtaaacatagggttatcccttttctccct 197  Q
    ||||||||||| |||||||||  | |||||||||||||||||    
T  37463082 aaccctaacacacgtaaacatctgattatcccttttctccct 37463041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 37462993 - 37462929
Alignment:
Q  236 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 300  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctctt 37462929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 5149 - 4921
Alignment:
Q  68 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 167  Q
    |||||||||||||||||||||||||||| | ||||||||| || ||||| |||   | |||   | | |||| ||||||||| ||||||||||||||| |    
T  5149 tatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatc 5050  T
Q  168 cgtaaacatagggttatcccttttctccctcttcctattccta----ttcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgat 263  Q
    |||||||||    ||||||||||||||||||| |||||| ||     ||||  | || ||| | ||   ||||||||| ||||| |||||||||||||||    
T  5049 cgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgaca-tgaactgctccttatgcgttcacggcttcggttttgat 4951  T
Q  264 tctttatccggcgattacaaactcctcaga 293  Q
     ||||| |||||||||||||| ||||||||    
T  4950 cctttaaccggcgattacaaaatcctcaga 4921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  239 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 300  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University