View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1908_low_3 (Length: 345)
Name: NF1908_low_3
Description: NF1908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1908_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 13182206 - 13181877
Alignment:
| Q |
1 |
atcaatcgaaaacgcatttcatttttataaggcggctaaagtgtcaacttttttattctttcttattcattcgttcaggtcgcatctggtgagtggtcat |
100 |
Q |
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| T |
13182206 |
atcaatcaaaaacgcatttcatttttataaggcggctaaagtgtcaactctattattctttcttattcattcgttcaggtcgcatctggtgagtggtcat |
13182107 |
T |
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| Q |
101 |
tctttctttgcatgc-gtctctttttactattactttgacctttccttctccccaaaattcatttgaaccaaactctttttaaagagcttcaattgttgg |
199 |
Q |
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| T |
13182106 |
tctttctttgtatgctgtctctttttactattactttgacctttccttctccccaaaattcatttgaaccaaactctttttaaagtgcttcaattgttgg |
13182007 |
T |
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| Q |
200 |
tttcttgtcattgattgattaagtaactatagttcttaaccattttcactgatgaacatgttgaaaactgattctactatgagaggacccaattcaccgg |
299 |
Q |
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| T |
13182006 |
tttcttgtcattgattgattaagtaactatagttcttaaccattttcactgatgaacatgttgaaaactgattctagtatgagaggacccaattcaccgg |
13181907 |
T |
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| Q |
300 |
ttttacctttcaaaagcaggttaacatttt |
329 |
Q |
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| T |
13181906 |
ttttacctttcaaaagcaggttaacatttt |
13181877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 13190183 - 13190019
Alignment:
| Q |
61 |
tcttattcattcgttcaggtcgcatctggtgagtggtcattctttctttgcatgc-gtctctttttactattactttgacctttccttctccccaaaatt |
159 |
Q |
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| T |
13190183 |
tcttattcattcattcaggtggtatttggtgagtgatcattctatctttgtatcctgtctcttgttactgttactttgacctttccttctcctcaaa-tt |
13190085 |
T |
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| Q |
160 |
catttgaaccaaactctttttaaagagcttcaattgttggtttcttgtcattgattgattaagtaact |
227 |
Q |
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| T |
13190084 |
catttgaaccaaactctttc--atgagcttcaattgtcggtttcttgtcattgattgattaagcaact |
13190019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 13189968 - 13189918
Alignment:
| Q |
279 |
tgagaggacccaattcaccggttttacctttcaaaagcaggttaacatttt |
329 |
Q |
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| T |
13189968 |
tgagaggacccaattcaccggttttacctttcaacagcaggttaacatttt |
13189918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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