View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19090_high_1 (Length: 542)

Name: NF19090_high_1
Description: NF19090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19090_high_1
NF19090_high_1
[»] chr8 (5 HSPs)
chr8 (1-213)||(5793531-5793741)
chr8 (295-394)||(5793825-5793924)
chr8 (1-68)||(29918553-29918620)
chr8 (415-445)||(5793943-5793973)
chr8 (5-47)||(17108326-17108368)
[»] chr4 (5 HSPs)
chr4 (1-67)||(16575064-16575130)
chr4 (1-68)||(21714051-21714118)
chr4 (1-67)||(33516149-33516215)
chr4 (1-41)||(4741318-4741358)
chr4 (1-68)||(7334261-7334326)
[»] chr7 (1 HSPs)
chr7 (1-49)||(31345477-31345525)
[»] chr1 (5 HSPs)
chr1 (1-68)||(39219205-39219272)
chr1 (5-68)||(5290372-5290436)
chr1 (1-68)||(48125758-48125825)
chr1 (1-63)||(5293490-5293552)
chr1 (1-49)||(43513123-43513171)
[»] chr2 (5 HSPs)
chr2 (4-138)||(17845396-17845531)
chr2 (1-68)||(11958962-11959029)
chr2 (1-48)||(13531896-13531943)
chr2 (1-50)||(40359291-40359340)
chr2 (1-50)||(30696871-30696920)
[»] scaffold1322 (1 HSPs)
scaffold1322 (1-64)||(1057-1120)
[»] chr6 (1 HSPs)
chr6 (7-68)||(372857-372917)
[»] chr3 (1 HSPs)
chr3 (1-49)||(4553137-4553184)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5793531 - 5793741
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatgtgcgggtacgtacttatatctccattacttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  5793531 tttgagtttctatttatataaaaatgataattaattgattttttacatttaggacgagtttgagtatgtgtgggtacgtacttatatctccattacttgt 5793630  T
Q  101 ctcatatata-ccatgttttgaaatcggagaaaactcaatcaaagcgggaaaaacacgttaatttagatttggtttgagcggatacccgcttactctgtt 199  Q
     ||||| ||| |||| |||||||   | ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| | |||| ||||    
T  5793631 gtcatacatacccatattttgaa---gaagaaaactcaatcaaagcggggaaaacacgttaatttagatttggtttcagcgggtacccacatactttgtt 5793727  T
Q  200 atcatgtctaaata 213  Q
    ||||||||||||||    
T  5793728 atcatgtctaaata 5793741  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 295 - 394
Target Start/End: Original strand, 5793825 - 5793924
Alignment:
Q  295 actaatacaatttaagttccaccaacatccttattgcataaaataaataatacccaacaaaaatcagtatgaccgtgtctcaaagtccacatatcacctg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5793825 actaatacaatttaagttccaccaacatccttattgcataaaataaataatacccaacaaaaatcagtatgatcgtgtctcaaagtccacatatcacctg 5793924  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29918553 - 29918620
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 68  Q
    |||||||||||||||||||||||  | |||| ||||||||||||||||||  |||| ||||| |||||    
T  29918553 tttgagtttctatttatataaaagaggtaataaattgattttttacatttgggacgggtttgtgtatg 29918620  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 445
Target Start/End: Original strand, 5793943 - 5793973
Alignment:
Q  415 gaagtccacatatcactctcatttttctgca 445  Q
    |||||||||||||||||||||||||||||||    
T  5793943 gaagtccacatatcactctcatttttctgca 5793973  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 17108326 - 17108368
Alignment:
Q  5 agtttctatttatataaaaatgataattaattgattttttaca 47  Q
    |||||||||||||||||||  |||||| |||||||||||||||    
T  17108326 agtttctatttatataaaatggataataaattgattttttaca 17108368  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16575064 - 16575130
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtat 67  Q
    ||||||||||||||||||| |||| | |||| |||| |||||||||||||| |||||||||||||||    
T  16575064 tttgagtttctatttatattaaaagggtaataaattaattttttacatttaagacgagtttgggtat 16575130  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21714118 - 21714051
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 68  Q
    |||||||||||||||||||||||  | |||| |||| ||||| |||||||  ||||||||| ||||||    
T  21714118 tttgagtttctatttatataaaagaggtaataaattaattttctacatttgagacgagtttaggtatg 21714051  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33516215 - 33516149
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtat 67  Q
    ||||||||| |||||||||||||  | ||||  |||||||||||||||||  |||| ||||||||||    
T  33516215 tttgagtttttatttatataaaaggggtaatacattgattttttacatttgagacgggtttgggtat 33516149  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4741358 - 4741318
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattt 41  Q
    |||||||||||||||||||||||  |||||| |||||||||    
T  4741358 tttgagtttctatttatataaaatggataataaattgattt 4741318  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7334326 - 7334261
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 68  Q
    ||||||||||||||||||  |||| |||||| ||||||||||  ||||||  ||||||||||| ||||    
T  7334326 tttgagtttctatttata--aaaacgataataaattgattttcaacatttgggacgagtttggatatg 7334261  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31345477 - 31345525
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatt 49  Q
    |||||||||||||||||||||||||| || | |||||||||||||||||    
T  31345477 tttgagtttctatttatataaaaatggtagtaaattgattttttacatt 31345525  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39219205 - 39219272
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 68  Q
    |||||||||||||||||||||||  | |||| |||| ||||| ||||||||  |||||||||||||||    
T  39219205 tttgagtttctatttatataaaagaggtaataaattaattttctacatttagaacgagtttgggtatg 39219272  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 5290436 - 5290372
Alignment:
Q  5 agtttctatttatataaaaatgataattaattgattt-tttacatttatgacgagtttgggtatg 68  Q
    |||||||||||||||||||  |||||| | ||||||| |||||||| |||||||||||| |||||    
T  5290436 agtttctatttatataaaagagataataatttgatttatttacattcatgacgagtttgtgtatg 5290372  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 48125825 - 48125758
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 68  Q
    |||||||||||||||||||||||  | || | |||||||||| ||||||   ||||||||||||||||    
T  48125825 tttgagtttctatttatataaaagcggtagtaaattgattttctacattcgcgacgagtttgggtatg 48125758  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5293552 - 5293490
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgg 63  Q
    ||||||||||||||||||||||| ||||||| |||||| |||  |||||   |||||||||||    
T  5293552 tttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 5293490  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43513171 - 43513123
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatt 49  Q
    ||||||||||||||||||||||||   | || |||||||||||||||||    
T  43513171 tttgagtttctatttatataaaaagagttataaattgattttttacatt 43513123  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 17845531 - 17845396
Alignment:
Q  4 gagtttctatttatataaaaatgataattaattgatt-ttttacatttatgacgagtttgggtatg---tgcgggtacgtacttatatctccattacttg 99  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||   |||| |||||||||||   |  ||||  |||||||||| ||||||||  |    
T  17845531 gagtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatgggttaagggtgggtacttatatgtccattaccgg 17845432  T
Q  100 tctcatatataccatgttttgaaatcggagaaaactcaa 138  Q
    |||||||     | ||||||||||||| |||||||||||    
T  17845431 tctcata---ctcgtgttttgaaatcgaagaaaactcaa 17845396  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11958962 - 11959029
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 68  Q
    |||||||||||  ||||||||||  | |||| |||||||||| |||||| |||| |||||||||||||    
T  11958962 tttgagtttctgcttatataaaagaggtaataaattgattttatacattcatgatgagtttgggtatg 11959029  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13531896 - 13531943
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacat 48  Q
    |||||||||||||||||||||||  |||||| |||||||||| |||||    
T  13531896 tttgagtttctatttatataaaatggataataaattgattttctacat 13531943  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40359291 - 40359340
Alignment:
Q  1 tttgagtttctatttatataaaa-atgataattaattgattttttacattt 50  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  40359291 tttgagtttctatttatataaaagatg-taataaattgattttttacattt 40359340  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30696871 - 30696920
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacattt 50  Q
    ||||| |||||||||||||||||  | |||| ||||||||||||||||||    
T  30696871 tttgaatttctatttatataaaatgggtaataaattgattttttacattt 30696920  T

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Target: scaffold1322 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1057 - 1120
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttggg 64  Q
    |||||||||||||||||||||||  | |||| |||| ||||| |||||| |||||| |||||||    
T  1057 tttgagtttctatttatataaaatgggtaataaattaattttctacattcatgacgggtttggg 1120  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 372917 - 372857
Alignment:
Q  7 tttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 68  Q
    |||||||||||||||||  |||||| | |||| |||||||||| |||| |||||||||||||    
T  372917 tttctatttatataaaag-gataataagttgactttttacattcatgatgagtttgggtatg 372857  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4553137 - 4553184
Alignment:
Q  1 tttgagtttctatttatataaaaatgataattaattgattttttacatt 49  Q
    ||||||||| ||||||||||||||  ||||| |||||||||||||||||    
T  4553137 tttgagtttttatttatataaaaa-aataataaattgattttttacatt 4553184  T

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