View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19090_high_3 (Length: 203)

Name: NF19090_high_3
Description: NF19090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19090_high_3
NF19090_high_3
[»] chr6 (8 HSPs)
chr6 (18-189)||(28086773-28086944)
chr6 (16-189)||(27926890-27927064)
chr6 (16-189)||(28056131-28056304)
chr6 (16-120)||(28026353-28026457)
chr6 (16-116)||(27906758-27906858)
chr6 (16-120)||(27995820-27995924)
chr6 (16-172)||(28529377-28529533)
chr6 (16-116)||(28012099-28012199)
[»] chr5 (1 HSPs)
chr5 (16-189)||(1435438-1435611)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 28086773 - 28086944
Alignment:
Q  18 ttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatccg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28086773 ttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatccg 28086872  T
Q  118 ttannnnnnnncttactctatgtggaggaggtatgattcttttcattttaattaagtttaaaaccttccaac 189  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28086873 ttattttttttcttactctatgtggaggaggtatgattcttttcattttaattaagtttaaaaccttccaac 28086944  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 27927064 - 27926890
Alignment:
Q  16 tcttcatgtattcctggagttatg-aaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgat 114  Q
    |||||||| ||||||| ||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27927064 tcttcatggattcctgaagttatggaatcctcaagcgaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttattgat 27926965  T
Q  115 ccgttannnnnnnncttactctatgtggaggaggtatgattcttttcattttaattaagtttaaaaccttccaac 189  Q
    || |||        ||||||||||||| |  |||||| ||||||||||||||| |||| | ||||| ||||||||    
T  27926964 ccattatttttcttcttactctatgtgaacaaggtataattcttttcattttatttaattgtaaaatcttccaac 27926890  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 28056131 - 28056304
Alignment:
Q  16 tcttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatc 115  Q
    ||||||||||||||||||||||||||||||||  | ||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  28056131 tcttcatgtattcctggagttatgaaccctcacacgaaagtcgtactacaatggaacaaggttttggccatattttgcatggtcacaatttttgttgatc 28056230  T
Q  116 cgttannnnnnnncttactctatgtggaggaggtatgattcttttcattttaattaagtttaaaaccttccaac 189  Q
    |||||        || |||||||||| |  |||| | ||||||||||||||| |||||| |||||  |||||||    
T  28056231 cgttatttttcttctcactctatgtgaacaaggtttaattcttttcattttatttaagtgtaaaattttccaac 28056304  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 28026353 - 28026457
Alignment:
Q  16 tcttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatc 115  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||    
T  28026353 tcttcgtgtattcctggtgttatgaacccccatgcgaaagttgtacaacaatggaacaagtttttggccatattttgcatagtcgcaatttatgttgatc 28026452  T
Q  116 cgtta 120  Q
    |||||    
T  28026453 cgtta 28026457  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 27906758 - 27906858
Alignment:
Q  16 tcttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatc 115  Q
    |||||||||||||| |||||||||||||| || || | | || ||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||    
T  27906758 tcttcatgtattccaggagttatgaacccacacgcgagaattatacaacaatggaacaagttgttggacatattttgcttggtcgcaattcttgttgatc 27906857  T
Q  116 c 116  Q
    |    
T  27906858 c 27906858  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 27995820 - 27995924
Alignment:
Q  16 tcttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatc 115  Q
    ||||||||||||||| ||||||||||||||||    ||||| ||||||||||||||||   |||| || |||| |||||  |||||||||||| ||||||    
T  27995820 tcttcatgtattcctagagttatgaaccctcactgtaaagtcgtacaacaatggaacacaatttttgctatatcttgctcagtcgcaattttttttgatc 27995919  T
Q  116 cgtta 120  Q
    |||||    
T  27995920 cgtta 27995924  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 28529377 - 28529533
Alignment:
Q  16 tcttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatc 115  Q
    ||||||||| ||||||||||||| ||||||||  | ||| |||| ||||||||||||||  || ||||||| |||||| || | ||||||||||| ||||    
T  28529377 tcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatc 28529476  T
Q  116 cgttannnnnnnncttactctatgtggaggaggtatgattcttttcattttaattaa 172  Q
    | |||        |||| | |||||| || |||||||||||||||| ||||| ||||    
T  28529477 cattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaa 28529533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 28012099 - 28012199
Alignment:
Q  16 tcttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatc 115  Q
    |||||||||||||||  ||||||||||||  |    |||||||||||   |||||||||| ||||||||||| ||||||| || ||||||||||| ||||    
T  28012099 tcttcatgtattcctaaagttatgaaccccgactgtaaagttgtacacttatggaacaagtttttggccataatttgctttgttgcaatttttgtggatc 28012198  T
Q  116 c 116  Q
    |    
T  28012199 c 28012199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 1435438 - 1435611
Alignment:
Q  16 tcttcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatc 115  Q
    |||||||||||||||||||| |||||||||||  ||||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||    
T  1435438 tcttcatgtattcctggagtgatgaaccctcacacaaaaattgtacagcaatggaacaagtttttggccatattttgcctgctcgcaatttttgttgatc 1435537  T
Q  116 cgttannnnnnnncttactctatgtggaggaggtatgattcttttcattttaattaagtttaaaaccttccaac 189  Q
    | |||        |||||| |||||| |  || | ||||||||||||||||| |||||| ||||| ||||||||    
T  1435538 ccttatttttcttcttactttatgtgcacaagttttgattcttttcattttatttaagtataaaatcttccaac 1435611  T

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