View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19091_high_3 (Length: 357)
Name: NF19091_high_3
Description: NF19091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19091_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 27722682 - 27723020
Alignment:
| Q |
1 |
atgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacatttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27722682 |
atgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacatttac |
27722781 |
T |
|
| Q |
101 |
gacatatgcatcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggatcaattaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27722782 |
gacatatgcatcaaatcagatttttgactttaggcagtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggatcaattaa |
27722881 |
T |
|
| Q |
201 |
ttcatcaatacagtgtcgataagcacttctaacttcatcaatacgcttatcaagacagtgtcgatattcacttttaactgaaaacagcaattcctttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27722882 |
ttcatcaatacagtgtcgataagcacttctaacttcatcaatacgcttatcaagacagtgtcaatattcacttttaactgaaaacagcaattcctttatt |
27722981 |
T |
|
| Q |
301 |
tttatttttctaataccattggtgtatgtatatagttac |
339 |
Q |
| |
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| T |
27722982 |
tttatttttctaataccattggtgtatgtatatagttac |
27723020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 27734631 - 27734986
Alignment:
| Q |
1 |
atgagcatgcaatcttcatcaaaggtatcacacataacagagttacat--ggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacattt |
98 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||| |||||||| ||||| |
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| T |
27734631 |
atgagtatgcaatcttcatcaaaggtattacacataacagagttacatatggacagtttactgcaagatcatgcaacctagatctcgtaggcaaccattt |
27734730 |
T |
|
| Q |
99 |
acgacatatgcatcaaatcagatttt-----tgac---------tttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggt |
184 |
Q |
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||||||||| ||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||||||||||| | | || | | |
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| T |
27734731 |
acgacatatctatcaaatcagattttggcagtgaccataacagagtttggccgtgaccctaactttcaaatgagattccatcgaccatggactttaggat |
27734830 |
T |
|
| Q |
185 |
gagttggatcaattaattcatcaatacagtg---tcgataagca-cttctaacttcatc-aatacgcttatcaagacagtgtcgatattcacttttaact |
279 |
Q |
| |
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|||||||||||||||||| |||||||||||| || | | | |||| ||| | |||||| |||||| ||||||||||||||| |||| ||||| |
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| T |
27734831 |
gagttggatcaattaatttatcaatacagtgtattctaactgtatattctccagtcaccaaatacgtttatcaggacagtgtcgatatttacttctaact |
27734930 |
T |
|
| Q |
280 |
gaaaacagcaattcctttatttttatttttctaataccattggtgtatgtatatagttac |
339 |
Q |
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||||||| ||||| | ||||| || || ||||||||||||||||||||||||||||| |
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| T |
27734931 |
gaaaacaacaatttcattatt----ttcttttaataccattggtgtatgtatatagttac |
27734986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 27722521 - 27722557
Alignment:
| Q |
8 |
tgcaatcttcatcaaaggtatcacacataacagagtt |
44 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
27722521 |
tgcaatcttcatcaaaggtatcacacataacacagtt |
27722557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 14680416 - 14680641
Alignment:
| Q |
7 |
atgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacatttacgacata |
106 |
Q |
| |
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|||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14680416 |
atgcaatcttcatcaaaggtatcaaacataacacatttacatggactgtttattgcaagatcacgcaaccgagatctggtaggcaaacatttacgacata |
14680515 |
T |
|
| Q |
107 |
tgcatcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggatcaattaattcatc |
206 |
Q |
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| T |
14680516 |
tctgccaaatcagatttttgactttagctggtgcccataactttcaaatgagattccatcgaccatgaactatatgatgagttggatcaattaattcatc |
14680615 |
T |
|
| Q |
207 |
aatacagtgtcgataagcacttctaa |
232 |
Q |
| |
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|||||||||||| | ||||| ||||| |
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| T |
14680616 |
aatacagtgtcggtgagcacgtctaa |
14680641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 14680684 - 14680737
Alignment:
| Q |
276 |
aactgaaaacagcaattcctttatttttatttttctaataccattggtgtatgt |
329 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
14680684 |
aactgaaaacagcaattcctttatttttatttttttaataccatcggtgtatgt |
14680737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 26092330 - 26092371
Alignment:
| Q |
255 |
acagtgtcgatattcacttttaactgaaaacagcaattccttt |
297 |
Q |
| |
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||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
26092330 |
acagtgtcgatattcacttctaactgaaaa-agcaattccttt |
26092371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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