View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19091_high_8 (Length: 221)
Name: NF19091_high_8
Description: NF19091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19091_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 23644341 - 23644151
Alignment:
| Q |
12 |
atcatcatccgttatacaattgataagctctaaagtagataaagagaatataataatattaatagattgagataaaatattgtgtatgaacaa--aaaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
23644341 |
atcatcatccgttatacaattgataagctctaaagtagataaagagaatataataatattaataaaatgagataaaatattgtgtatgaacaaaaaaaac |
23644242 |
T |
|
| Q |
110 |
taaagaagaacatttaaaaaggacgnnnnnnntagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaat |
203 |
Q |
| |
|
|| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23644241 |
ta---aataacatttaaaaaggacaaaaaaaatagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaat |
23644151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 23654001 - 23653940
Alignment:
| Q |
142 |
tagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
23654001 |
tagcttaccaccgtcaacgttcattacaacaagaaatggagaaagaaatataattatagaat |
23653940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University