View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19091_low_1 (Length: 500)
Name: NF19091_low_1
Description: NF19091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19091_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 137 - 427
Target Start/End: Original strand, 2422609 - 2422897
Alignment:
| Q |
137 |
aaaagtgattgggtttatttttactggtatatcggtttgagtaatgaatagacaagtttactaggtggtgtggaagtgcatatatatgtcaattaactct |
236 |
Q |
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| T |
2422609 |
aaaagtgattgggtttatttttactggtatatcggtttgagtaatgaatagacaagtttactaggtggtgtggaagtgcatatat--gtcaattaactct |
2422706 |
T |
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| Q |
237 |
tgttattttatttttcatataactaagtgatctttnnnnnnnnttaattttaatacactaccaatgcaaaatgttttacacggccaactaatcacaatca |
336 |
Q |
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| T |
2422707 |
tgttattttatttttcatataactaagtgttctttaaaaaaaattaattttaatacactaccaatgcaaaatgttttacacggccaactaatcacaatca |
2422806 |
T |
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| Q |
337 |
tttatatgtgtaacttaatataattaaatttaactgtttttaatgactacaaaattatgattgattgacaatgtataaaagttttacacta |
427 |
Q |
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| T |
2422807 |
tttatatgtgtaacttaatataattaaatttaattgtttttaatgactacaaaattatgattgattgagaatgtataaaagttttacacta |
2422897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 2421531 - 2421685
Alignment:
| Q |
1 |
ctctctatttttgtttagtcccataatttttaaatttgaacttatggtccctccacttcataatttt--------atagatgcatccc--nnnnnnnnnn |
90 |
Q |
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| T |
2421531 |
ctctctatttttgtttagtcccataatttttaaatttgaacttatggtccctccactttataattttatagaaaaatagatgcatcccaaaaaaaaaaaa |
2421630 |
T |
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| Q |
91 |
gatgcatatgtcgaaaagcttttaagtcttgttatttcataaataaaaaagtgat |
145 |
Q |
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| T |
2421631 |
gatgcatatgtcgaaaagttttcaagtcttgttatttcataaataaaaaagtgat |
2421685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 500
Target Start/End: Original strand, 2422941 - 2422975
Alignment:
| Q |
466 |
gaaacatatcatccaaaaatatatattaattgata |
500 |
Q |
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| T |
2422941 |
gaaacatatcatccaaaaatatatattaattgata |
2422975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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