View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19091_low_2 (Length: 432)
Name: NF19091_low_2
Description: NF19091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19091_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 3831507 - 3831105
Alignment:
| Q |
19 |
tttttgatgtaataactttgtatcatgttgtaatacctcattgcaatatagaaatggcttctctaatttgtttggtttttctgtcatgtcacggttaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3831507 |
tttttgatgtaataactttgtatcatgttgtaatacctcagtgcaatatagaaatggcttctctaatttgtttggtttttctgtcatgtcacggttaaca |
3831408 |
T |
|
| Q |
119 |
aaactaagatgtttatgggttgagttaaacagcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3831407 |
aaactaagatgtttatgggttgagttaaacggcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacac |
3831308 |
T |
|
| Q |
219 |
cattttcaagggtatcaagaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3831307 |
cattttcaagggtatcaagaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacat |
3831208 |
T |
|
| Q |
319 |
aaaagtttatgttgtttccctttactttgctatccttttctagttcnnnnnnnnngcgatgaattcgtaaacttttcttctctcaacaccccttaatgtt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
3831207 |
aaaagtttatgttgtttccctttactttgctatccttttccagttctttttttttgcgatgaattcgtaaagttttcttctctcaacacaccttaatgtt |
3831108 |
T |
|
| Q |
419 |
ctt |
421 |
Q |
| |
|
||| |
|
|
| T |
3831107 |
ctt |
3831105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 3837659 - 3837557
Alignment:
| Q |
127 |
atgtttatgggttgagttaaacagcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttca |
226 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||| |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||||| |||| | |
|
|
| T |
3837659 |
atgtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacacctttttta |
3837560 |
T |
|
| Q |
227 |
agg |
229 |
Q |
| |
|
||| |
|
|
| T |
3837559 |
agg |
3837557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 3837514 - 3837436
Alignment:
| Q |
278 |
ccgagttttatccttcttttggtaccaaggtaatcagacataaaagtttatgttgtttccctttactttgctatccttt |
356 |
Q |
| |
|
|||||| || |||||||| | ||| |||||||| |||||||||| |||||||| |||| |||| |||||||||||||| |
|
|
| T |
3837514 |
ccgagtcttctccttcttccgttacaaaggtaataagacataaaaatttatgttctttctcttttctttgctatccttt |
3837436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University