View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19091_low_4 (Length: 333)
Name: NF19091_low_4
Description: NF19091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19091_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 5374253 - 5374576
Alignment:
| Q |
1 |
atctcccaaaccatattccaacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374253 |
atctcccaaaccatattccaacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcga |
5374352 |
T |
|
| Q |
101 |
ctatttaacttctctccacactctagatctttaccaccgcccacatgatttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374353 |
ctatttaacttctctccacactctagatctttaccaccgcccacatgatttcgatttcatgtgccctgacatactcaaaagcattgtatactatactgtt |
5374452 |
T |
|
| Q |
201 |
acacataatgtccagcgagtacgaatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgaccttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374453 |
acacataatgtccagcgagtacgaatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgaccttt |
5374552 |
T |
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| Q |
301 |
ctattcatcaagatgggatagtat |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
5374553 |
ctattcatcaagatgggatagtat |
5374576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 48 - 310
Target Start/End: Original strand, 5368543 - 5368805
Alignment:
| Q |
48 |
aactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcgactatttaacttctctccacactctagatctttaccaccgcccacatg |
147 |
Q |
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| T |
5368543 |
aactctttcaacagtttcgtggaatcagtgtctcggattttatctcttcgcgatgatttaacttctctccaaactctagatctttaccactgcccacgtg |
5368642 |
T |
|
| Q |
148 |
atttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacgaatctgtgtcacttgtaatattca |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5368643 |
atttcgatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacatataatgtccagcgagtacgagtctgtgtcacttgtaatattca |
5368742 |
T |
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| Q |
248 |
acaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattcatca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5368743 |
acaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattcatca |
5368805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 5356051 - 5356240
Alignment:
| Q |
1 |
atctcccaaaccatattccaacccttagattaagttctccagtctttaactctttcgacagtttcgcaaaatcagtttgtctgattttatctcatcgcga |
100 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||| | || |||||||||||||||||| |
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| T |
5356051 |
atctcccaaaacatctctcaacccttagattaagttccacagtcttttactcttttgacagtttcatgaaatcagtctctcggattttatctcatcgcga |
5356150 |
T |
|
| Q |
101 |
ctatttaacttctctccacactctagatctttaccaccgcc---cacatgatttcgatttcgtgtgccctgacatactcaaaagcattgt |
187 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
5356151 |
tgatttaacttctctccacactctagatctttataaccgccacacacattatttcgatttcgtggaccctgacatattcaaaagcattgt |
5356240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 5367891 - 5367996
Alignment:
| Q |
202 |
cacataatgtccagcgagtacgaatctgtgtcacttgtaatattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttc |
301 |
Q |
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||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
5367891 |
cacataatgtccagctactacgaatctctgtcagttgtgatattcaacaacttcagtctagcttattttcatctcaaaccttaacgtctcttgacctttc |
5367990 |
T |
|
| Q |
302 |
tattca |
307 |
Q |
| |
|
|||||| |
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| T |
5367991 |
tattca |
5367996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 5362626 - 5362780
Alignment:
| Q |
153 |
gatttcgtgtgccctgacatactcaaaagcattgtatactatactgttacacataatgtccagcgagtacgaatctgtgtcacttgtaatattcaacaac |
252 |
Q |
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||||||||| |||||| |||||| ||||||| ||| | || | || ||||||||||||||| | ||||||||| ||||| |||| |||||||||||| |
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| T |
5362626 |
gatttcgtggaccctgaaatactcgaaagcatggtaaattacgccatttcacataatgtccagctattacgaatctctgtcagttgtgatattcaacaac |
5362725 |
T |
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| Q |
253 |
ttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
307 |
Q |
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||| |||| ||||||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
5362726 |
ttcagtctagcttattttcatctcaaaccttaacgtctcttgacctttccattca |
5362780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 8400273 - 8400208
Alignment:
| Q |
242 |
tattcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
307 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||||||| || ||| |||||||| |||| |
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| T |
8400273 |
tattcaacaatttccatctttcttattttcatctcaaactttaacttctcttcacctttctcttca |
8400208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5362483 - 5362547
Alignment:
| Q |
1 |
atctcccaaaccatattccaacccttagattaagttctccagtctttaactctttcgacagtttc |
65 |
Q |
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|||| ||||||||||||||||| |||||||||||||| | | |||||||||||| ||| ||||| |
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| T |
5362483 |
atctaccaaaccatattccaactcttagattaagttccacgggctttaactcttttgactgtttc |
5362547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5367699 - 5367763
Alignment:
| Q |
1 |
atctcccaaaccatattccaacccttagattaagttctccagtctttaactctttcgacagtttc |
65 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||| | | |||||||||||| ||| ||||| |
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| T |
5367699 |
atctcccaaaccatctaccaacccttagattaagttccacgggctttaactcttttgactgtttc |
5367763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 30055021 - 30054957
Alignment:
| Q |
243 |
attcaacaacttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
307 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
30055021 |
attcaccaacttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
30054957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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