View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19091_low_6 (Length: 248)

Name: NF19091_low_6
Description: NF19091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19091_low_6
NF19091_low_6
[»] chr4 (3 HSPs)
chr4 (1-235)||(23644683-23644922)
chr4 (176-239)||(12823302-12823365)
chr4 (175-239)||(6943397-6943462)
[»] scaffold0011 (1 HSPs)
scaffold0011 (185-239)||(145845-145899)
[»] chr8 (3 HSPs)
chr8 (185-239)||(17794094-17794148)
chr8 (185-239)||(31439767-31439821)
chr8 (187-239)||(17953398-17953450)
[»] scaffold0008 (1 HSPs)
scaffold0008 (195-239)||(256406-256450)
[»] chr7 (1 HSPs)
chr7 (208-239)||(10387804-10387835)
[»] chr5 (2 HSPs)
chr5 (181-239)||(39519013-39519071)
chr5 (181-239)||(39523652-39523710)
[»] chr2 (2 HSPs)
chr2 (173-239)||(27414530-27414596)
chr2 (181-239)||(30651532-30651590)
[»] chr1 (2 HSPs)
chr1 (193-239)||(12260609-12260655)
chr1 (207-239)||(20107968-20108000)
[»] scaffold0690 (1 HSPs)
scaffold0690 (211-239)||(5846-5874)
[»] chr3 (2 HSPs)
chr3 (183-239)||(20169517-20169573)
chr3 (211-239)||(35456411-35456439)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 23644683 - 23644922
Alignment:
Q  1 ctaatttaaaaatatcatattttatttttaaacacaccaccta-----atatttttaataattaagtggaaacaaaattattttactttataagacaatc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  23644683 ctaatttaaaaatatcatattttatttttaaacacaccacctatcataatatttttaataattaagtggaaacaaaattattttacttcagaagacaatc 23644782  T
Q  96 tatgttggatgtgtactaaggatgataattagactattaaatcaaaaaattattgcagtaaggattgggaaaaagaaaagactttactcagttcataaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  23644783 tatgttggatgtgtactaaggatgataattagactattaaatcaaaatattattgtagtaaggattgggacaacgaaaagactttactcagttcataaaa 23644882  T
Q  196 cacatcatagaattctattgagttgtcgataactctttct 235  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  23644883 cacaccatagaattctattgagttgtcgataactctttct 23644922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 12823302 - 12823365
Alignment:
Q  176 actttactcagttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||| |||||||||| |||||||| || ||||||  |||||||||||| |||||||||||||||    
T  12823302 acttcactcagttcaaaaaacacaccaaagaatttcattgagttgtcggtaactctttctctct 12823365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 6943462 - 6943397
Alignment:
Q  175 gactttactcagttcataaaacacatcatagaatt-ctattgagttgtcgataactctttctctct 239  Q
    |||| ||||||||||| ||| ||||||| ||| || ||||||||||||||| ||||||||| ||||    
T  6943462 gactctactcagttcaaaaatcacatcaaagagtttctattgagttgtcgagaactctttcgctct 6943397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 145845 - 145899
Alignment:
Q  185 agttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||||| ||| |||| || ||| ||||||||||||||||||||||||||||||||    
T  145845 agttcaaaaatcacaccaaagagttctattgagttgtcgataactctttctctct 145899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 17794148 - 17794094
Alignment:
Q  185 agttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    ||||||||||||||| || |||||| ||||||||| |||| ||||||||||||||    
T  17794148 agttcataaaacacaccaaagaattttattgagttatcgagaactctttctctct 17794094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 31439821 - 31439767
Alignment:
Q  185 agttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||||| ||||||||||| ||| |||||||||||||  || ||||||||||||||    
T  31439821 agttcaaaaaacacatcaaagagttctattgagttggtgagaactctttctctct 31439767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 17953398 - 17953450
Alignment:
Q  187 ttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||| ||| |||| || ||| ||||||||||||||||| ||||||||||||||    
T  17953398 ttcaaaaatcacaccaaagagttctattgagttgtcgagaactctttctctct 17953450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 256450 - 256406
Alignment:
Q  195 acacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||    
T  256450 acacaccaaagagttctattgagttgtcgataactctttctctct 256406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 239
Target Start/End: Original strand, 10387804 - 10387835
Alignment:
Q  208 ttctattgagttgtcgataactctttctctct 239  Q
    ||||||||||||||||||||||||||||||||    
T  10387804 ttctattgagttgtcgataactctttctctct 10387835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 39519071 - 39519013
Alignment:
Q  181 actcagttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||||||||| |||||||| || ||| || |||||||||||||  ||||||||||||||    
T  39519071 actcagttcaaaaaacacaccaaagagttttattgagttgtcgggaactctttctctct 39519013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 39523710 - 39523652
Alignment:
Q  181 actcagttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||||||||| |||||||| || |||||| ||| |||||||||  ||||||||||||||    
T  39523710 actcagttcaaaaaacacaccaaagaattttatcgagttgtcgggaactctttctctct 39523652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 27414530 - 27414596
Alignment:
Q  173 aagactttactcagttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||||| ||||||| ||||||| ||||||| ||  ||||||||||| ||||| |||| |||||||||    
T  27414530 aagactatactcagctcataaatcacatcaaagggttctattgagtcgtcgagaactatttctctct 27414596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 30651590 - 30651532
Alignment:
Q  181 actcagttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||||||||| |||||||| || ||| || |||||||||||||  ||||||||||||||    
T  30651590 actcagttcaaaaaacacaccaaagagttttattgagttgtcgggaactctttctctct 30651532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 12260655 - 12260609
Alignment:
Q  193 aaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    ||||||| || |||||||||||||||||| || ||||||||||||||    
T  12260655 aaacacaccaaagaattctattgagttgttgagaactctttctctct 12260609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 20108000 - 20107968
Alignment:
Q  207 attctattgagttgtcgataactctttctctct 239  Q
    |||||||||||||||||| ||||||||||||||    
T  20108000 attctattgagttgtcgagaactctttctctct 20107968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 5874 - 5846
Alignment:
Q  211 tattgagttgtcgataactctttctctct 239  Q
    |||||||||||||||||||||||||||||    
T  5874 tattgagttgtcgataactctttctctct 5846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 20169517 - 20169573
Alignment:
Q  183 tcagttcataaaacacatcatagaattctattgagttgtcgataactctttctctct 239  Q
    |||||||| ||| ||||||| | | |||||||||||| ||||| |||||||||||||    
T  20169517 tcagttcacaaatcacatcaaatagttctattgagttatcgattactctttctctct 20169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 35456411 - 35456439
Alignment:
Q  211 tattgagttgtcgataactctttctctct 239  Q
    |||||||||||||||||||||||||||||    
T  35456411 tattgagttgtcgataactctttctctct 35456439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University