View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19091_low_7 (Length: 240)
Name: NF19091_low_7
Description: NF19091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19091_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5374262 - 5374038
Alignment:
| Q |
1 |
tttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374262 |
tttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaat |
5374163 |
T |
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| Q |
101 |
cagagagtctgtcttcttccttgttttccatattcgtgttagggtttgctgttattctctgtattttgggttcgaatggaagaatcattgttacgggaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374162 |
cagagagtctgtcttcttccttgttttccatattcgtgttagggtttgctgttattctctgtattttgggttcgaatggaagaatcattgttacgggaag |
5374063 |
T |
|
| Q |
201 |
aaacaaagtgattggaaacgcaaat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5374062 |
aaacaaagtgattggaaacgcaaat |
5374038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5367708 - 5367517
Alignment:
| Q |
1 |
tttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5367708 |
tttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatcgaatctggtaaat |
5367609 |
T |
|
| Q |
101 |
cagagagtctgtcttcttccttgttttccatattcgtgttagggtttgctgttattctctgtattttgggttcgaatggaagaatcattgtt |
192 |
Q |
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| T |
5367608 |
cagagagtctgtcttcttccttgttttcaatattcgtgttggggtttgttgttattctctttgttttgggttcgagtggaaaaatcattgtt |
5367517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5356060 - 5355840
Alignment:
| Q |
1 |
tttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5356060 |
tttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaat |
5355961 |
T |
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| Q |
101 |
cagagagtctgtcttcttccttgttttccatattcgtgttagggtttgctgttattctctgtattttgggttcgaatggaagaatcattgttacgggaag |
200 |
Q |
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|||||||||||| |||| |||||||| |||||| |||||||||||| ||||||||||| | | |||||||||| ||||| |||||||||||| || || |
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| T |
5355960 |
cagagagtctgt---cttcattgttttcaatattcctgttagggtttgttgttattctctctgtattgggttcgagtggaaaaatcattgttacagg-ag |
5355865 |
T |
|
| Q |
201 |
aaacaaagtgattggaaacgcaaat |
225 |
Q |
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|| |||||||| |||||| ||||| |
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| T |
5355864 |
aagcaaagtgaagggaaacacaaat |
5355840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 5362492 - 5362309
Alignment:
| Q |
1 |
tttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaat |
100 |
Q |
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||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5362492 |
tttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttctttggtgtccaataaggagagaatgtgatggagaatggaatctggtaaat |
5362393 |
T |
|
| Q |
101 |
cagagagtctgtcttcttccttgttttccatattcgtgttagggtttgctgttattctctgtattttgggttcgaatggaagaatca |
187 |
Q |
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||| |||||| |||||||||||||| |||||| |||||||||||| ||| ||||||| | ||||||||||| | ||||||||| |
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| T |
5362392 |
cagtgagtct---atcttccttgttttcaatattcatgttagggtttgttgtaattctctttgttttgggttcggacagaagaatca |
5362309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 8400512 - 8400598
Alignment:
| Q |
14 |
tccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaat |
100 |
Q |
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||||||| || ||||||| ||||||||||| ||| |||||| | || ||||||||||||||||||| ||||||||| ||||||| |
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| T |
8400512 |
tccatcttgttgagagtacacaagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataatggaatcaggtaaat |
8400598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 30055217 - 30055322
Alignment:
| Q |
13 |
ttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggagaatggaatctggtaaatcagagagtctgt |
112 |
Q |
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|||||||| || ||||||||| ||||||||||||||| ||| |||| || || |||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
30055217 |
ttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataatggaatctggtaaattgctgagtctgt |
30055316 |
T |
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| Q |
113 |
cttctt |
118 |
Q |
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|||||| |
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| T |
30055317 |
cttctt |
30055322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 28928464 - 28928513
Alignment:
| Q |
6 |
gagattcttccatctagtggagagtatggaagtttgaaaagcttgtttgg |
55 |
Q |
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|||||||||||||| ||||||||||||| ||||||||| ||||| ||||| |
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| T |
28928464 |
gagattcttccatcgagtggagagtatgcaagtttgaacagcttctttgg |
28928513 |
T |
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