View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19092_high_1 (Length: 769)

Name: NF19092_high_1
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19092_high_1
NF19092_high_1
[»] chr3 (1 HSPs)
chr3 (19-763)||(51374989-51375737)


Alignment Details
Target: chr3 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 19 - 763
Target Start/End: Complemental strand, 51375737 - 51374989
Alignment:
Q  19 acaaagtggtaatcttcataactaatcttgattatattgttttaatggtccaataccaacagacagaatattggaatgaaaaatcagttaaaaagcacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51375737 acaaagtggtaatcttcataactaatcttgattatattgttttaatggtccaataccaacagacagaatattggaatgaaaaatcagttaaaaagcacca 51375638  T
Q  119 atata----cagttctgagttctaacaacaatatacaaatcgatcataccaagatataatgagcaagtgttgctagcactgctcatgttttcaattctaa 214  Q
    |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51375637 atatatatacagttctgagttctaacaacaatatacaaatcgatcataccaagatataatgagcaagtgttgctagcactgctcatgttttcaattctaa 51375538  T
Q  215 ttataatcaactagtatggcctgtaacgaaatacaacagcatcaaaagcagacacatccacacactattacaatttatacatatgcaaatttcatcatat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  51375537 ttataatcaactagtatggcctgtaacgaaatacaacagcatcaaaagcagacacatccacacactattacaatttatacatattgaaatttcatcatat 51375438  T
Q  315 acacaacttaagaaaactaatcaacaaaacatgaaactaaagacatgtcatttttattggtgtttagcattttattgaaagaaactatttcaatagaaag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51375437 acacaacttaagaaaactaatcaacaaaacatgaaactaaagacatgtcatttttattggtgtttagcattttattgaaagaaactatttcaatagaaag 51375338  T
Q  415 agtttgaactttcaagtgtttcttttcaacggttacagaaattatttgtcactatcctaagggctaaaggagtaagccagtcaaaaaagaacattttggt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51375337 agtttgaactttcaagtgtttcttttcaacggttacagaaattatttgtcactatcctaagggctaaaggagtaagccagtcaaaaaagaacattttggt 51375238  T
Q  515 aacaatccgacaaaatcagagccttttttccaacatctgtccctgtatccctttcaaccttttgtattcaaacaccattctcaaacaagtcaaggtgcaa 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51375237 aacaatccgacaaaatcagagccttttttccaacatctgtccctgtttccctttcaaccttttgtattcaaacaccattctcaaacaagtcaaggtgcaa 51375138  T
Q  615 cttggtaattatatttcaactcaatacccaattccactctttctttctctatttaagcatgcacacatgcctctctctcacattcaacccatcctcttca 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51375137 cttggtaattatatttcaactcaatacccaattccactctttctttctctatttaagcatgcacacatgcctctctctcacattcaacccatcctcttca 51375038  T
Q  715 aatagtatttcaaataattcaattcatcactcttctctccctatgcttc 763  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51375037 aatagtatttcaaataattcaattcatcactcttctctccctttgcttc 51374989  T

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