View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_high_13 (Length: 278)
Name: NF19092_high_13
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_high_13 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: scaffold0620 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 1348 - 1142
Alignment:
| Q |
1 |
atggttttcaaacattgattttttgtatggttaataatgatccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgat |
100 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1348 |
atggattttaaacattgattttttgtatggttaataatgatccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgat |
1249 |
T |
|
| Q |
101 |
tcatcaaattagtctaatctaagttgacaaataatctcgttaataaatgagttgaacttgaattatgtattattcaattttttatgttatgagccaaatc |
200 |
Q |
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| T |
1248 |
tcatcaaattagtctaacctaaattgaccaataaactcgttaataaatgagttgaacttgaattatgcattattcaattttttatgttatgagccaaatc |
1149 |
T |
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| Q |
201 |
aatatgt |
207 |
Q |
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||||||| |
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| T |
1148 |
aatatgt |
1142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 34087895 - 34087689
Alignment:
| Q |
1 |
atggttttcaaacattgattttttgtatggttaataatgatccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgat |
100 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34087895 |
atggattttaaacattgattttttgtatggttaataatgatccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgat |
34087796 |
T |
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| Q |
101 |
tcatcaaattagtctaatctaagttgacaaataatctcgttaataaatgagttgaacttgaattatgtattattcaattttttatgttatgagccaaatc |
200 |
Q |
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||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34087795 |
tcatcaaattagtctaacctaaattgaccaataaactcgttaataaatgagttgaacttgaattatgcattattcaattttttatgttatgagccaaatc |
34087696 |
T |
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| Q |
201 |
aatatgt |
207 |
Q |
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||||||| |
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| T |
34087695 |
aatatgt |
34087689 |
T |
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