View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19092_high_2 (Length: 667)

Name: NF19092_high_2
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19092_high_2
NF19092_high_2
[»] chr2 (18 HSPs)
chr2 (291-646)||(42683220-42683574)
chr2 (18-302)||(42683589-42683875)
chr2 (285-402)||(4425875-4425992)
chr2 (316-399)||(34456935-34457018)
chr2 (323-399)||(1481056-1481132)
chr2 (317-399)||(40614739-40614822)
chr2 (319-398)||(31853667-31853746)
chr2 (288-389)||(4424883-4424978)
chr2 (314-402)||(31854228-31854316)
chr2 (292-369)||(41474695-41474770)
chr2 (316-400)||(31500779-31500863)
chr2 (322-401)||(31435032-31435111)
chr2 (323-365)||(44070781-44070823)
chr2 (315-400)||(2121285-2121370)
chr2 (342-399)||(41474601-41474658)
chr2 (289-332)||(15737888-15737932)
chr2 (274-401)||(30497764-30497892)
chr2 (323-399)||(31173381-31173457)
[»] chr4 (18 HSPs)
chr4 (269-402)||(43036421-43036554)
chr4 (292-399)||(40729880-40729987)
chr4 (317-402)||(2333822-2333907)
chr4 (132-211)||(43122854-43122932)
chr4 (271-396)||(36505723-36505852)
chr4 (316-399)||(32715269-32715352)
chr4 (316-399)||(49818644-49818727)
chr4 (316-399)||(48094422-48094505)
chr4 (291-361)||(50825945-50826015)
chr4 (319-400)||(35430496-35430577)
chr4 (353-400)||(1593858-1593905)
chr4 (317-364)||(22436072-22436119)
chr4 (314-377)||(47110741-47110804)
chr4 (341-383)||(17045027-17045069)
chr4 (316-401)||(19438324-19438409)
chr4 (319-388)||(25411667-25411736)
chr4 (320-401)||(43035765-43035846)
chr4 (374-402)||(31432617-31432645)
[»] scaffold0146 (3 HSPs)
scaffold0146 (289-396)||(32296-32402)
scaffold0146 (289-396)||(29954-30060)
scaffold0146 (288-399)||(24432-24544)
[»] chr1 (13 HSPs)
chr1 (288-399)||(21761277-21761388)
chr1 (287-398)||(37770195-37770306)
chr1 (286-396)||(18981486-18981596)
chr1 (321-399)||(33216334-33216412)
chr1 (326-401)||(12789643-12789718)
chr1 (319-400)||(45471403-45471484)
chr1 (319-402)||(18239448-18239531)
chr1 (346-399)||(33216985-33217038)
chr1 (317-365)||(15291184-15291232)
chr1 (324-400)||(26067166-26067242)
chr1 (316-375)||(11701780-11701839)
chr1 (317-365)||(38043420-38043468)
chr1 (324-400)||(45475531-45475607)
[»] chr5 (14 HSPs)
chr5 (288-397)||(36759165-36759274)
chr5 (271-334)||(36758496-36758559)
chr5 (316-399)||(43294196-43294279)
chr5 (286-363)||(34458030-34458108)
chr5 (291-399)||(5123687-5123798)
chr5 (289-399)||(16291263-16291373)
chr5 (317-401)||(23067659-23067743)
chr5 (353-401)||(11822237-11822285)
chr5 (322-378)||(16291998-16292054)
chr5 (343-398)||(1920177-1920232)
chr5 (316-399)||(26747694-26747777)
chr5 (353-400)||(27808555-27808602)
chr5 (291-356)||(36758446-36758511)
chr5 (319-363)||(12075899-12075943)
[»] chr3 (17 HSPs)
chr3 (286-399)||(44006395-44006508)
chr3 (288-399)||(44846956-44847067)
chr3 (319-400)||(44810660-44810741)
chr3 (317-400)||(38108771-38108854)
chr3 (316-400)||(8262721-8262805)
chr3 (323-401)||(4950857-4950934)
chr3 (287-399)||(42989803-42989915)
chr3 (315-399)||(42993462-42993546)
chr3 (319-396)||(14336903-14336980)
chr3 (349-401)||(12515330-12515382)
chr3 (317-400)||(30715873-30715956)
chr3 (353-399)||(37459728-37459774)
chr3 (358-400)||(51545240-51545282)
chr3 (319-399)||(2286026-2286106)
chr3 (319-399)||(18912259-18912339)
chr3 (317-365)||(48165253-48165301)
chr3 (317-365)||(55146596-55146644)
[»] chr7 (19 HSPs)
chr7 (311-399)||(47317776-47317864)
chr7 (286-398)||(27543683-27543795)
chr7 (283-363)||(27866848-27866928)
chr7 (312-396)||(18792623-18792707)
chr7 (288-396)||(27542969-27543077)
chr7 (286-363)||(18791965-18792042)
chr7 (324-399)||(20708207-20708282)
chr7 (324-399)||(20876251-20876326)
chr7 (316-399)||(47944384-47944467)
chr7 (316-399)||(47949814-47949897)
chr7 (322-399)||(3615322-3615399)
chr7 (316-365)||(34192015-34192064)
chr7 (316-400)||(1299065-1299149)
chr7 (342-399)||(38653077-38653134)
chr7 (319-404)||(46790690-46790775)
chr7 (317-363)||(3614417-3614463)
chr7 (317-399)||(10555070-10555152)
chr7 (331-401)||(27030617-27030687)
chr7 (282-338)||(28985243-28985300)
[»] chr8 (24 HSPs)
chr8 (288-399)||(32473113-32473224)
chr8 (319-400)||(6253301-6253382)
chr8 (288-399)||(6253552-6253664)
chr8 (314-399)||(602944-603031)
chr8 (316-400)||(33073676-33073760)
chr8 (271-361)||(32472429-32472522)
chr8 (320-398)||(5772789-5772867)
chr8 (319-364)||(20086227-20086272)
chr8 (320-399)||(233929-234008)
chr8 (320-399)||(710340-710419)
chr8 (320-399)||(747552-747631)
chr8 (320-399)||(871447-871526)
chr8 (291-400)||(44373990-44374100)
chr8 (322-401)||(603738-603816)
chr8 (316-403)||(16583186-16583273)
chr8 (316-399)||(34676917-34677000)
chr8 (324-399)||(45120729-45120804)
chr8 (288-333)||(775658-775704)
chr8 (288-333)||(781312-781358)
chr8 (353-403)||(17443370-17443420)
chr8 (297-374)||(34587657-34587735)
chr8 (324-401)||(23231306-23231383)
chr8 (323-399)||(8816592-8816668)
chr8 (289-332)||(18700844-18700888)
[»] chr6 (5 HSPs)
chr6 (321-399)||(2435254-2435332)
chr6 (316-399)||(16185346-16185429)
chr6 (319-401)||(31860708-31860790)
chr6 (344-399)||(19268327-19268382)
chr6 (317-399)||(33523896-33523978)
[»] scaffold0325 (1 HSPs)
scaffold0325 (316-399)||(2813-2896)
[»] scaffold0915 (1 HSPs)
scaffold0915 (282-338)||(749-806)
[»] scaffold0688 (1 HSPs)
scaffold0688 (317-401)||(5913-5997)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 291 - 646
Target Start/End: Complemental strand, 42683574 - 42683220
Alignment:
Q  291 cggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaa 390  Q
    ||||||||||||| || |||||||||||| | ||||||||  | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42683574 cggtagttaactgctgtcgggtcctcaacaggagttaactgtcattgggggcatttaagtattttatttgtgtcattgtgaagttttttatgtcaaaaaa 42683475  T
Q  391 gcaattttcttt-aagtttaaaaacgaacaccactatttatgccatacagtgaaaccgagtcgatataaaaaccacaagcttatgacattcacatatttc 489  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42683474 gcaattttcttttaagtttaaaaacgaacaccactatttatgccatacag--aaaccgagtcgatataaaaaccacaagcttatgacattcacatatttc 42683377  T
Q  490 ataccagaaaacttcttccaccttaaacaatgctgtgtttaacatagtccctatcccaacaacaagctttttctactaaaggattttggaaagcatttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42683376 ataccagaaaacttcttccaccttaaacaatgctgtgtttaacatagtccctatcccaacaacaagctttttctactaaaggattttggaaagcattttt 42683277  T
Q  590 tttagccaaagcaggaggctccatgcttacaataatattaatagaaaatgaatctaa 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42683276 tttagccaaagcaggaggctccatgcttacaataatattaatagaaaatgaatctaa 42683220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 42683875 - 42683589
Alignment:
Q  18 tgaatgacagattttgataatccattcagcatctgggtcactaattttatatcaaggttttgaaatttaaaacaaaaa--taataatttgaagaagaagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  42683875 tgaatgacagattttgataatccattcagcatctgggtcactaattttatatcaaggttttgaaatttaaaacaaaaaaataataatttgaagaagaagc 42683776  T
Q  116 tacaccattttattaattttacaggagaagaatcatatgttggaacccatgtgttagcaaggaaaaggaggatgaaagagagaggggaagaagaacccga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42683775 tacaccattttattaattttacaggagaagaatcatatgttggaacccatgtgtgagcaaggaaaaggaggatgaaagagagaggggaagaagaacccga 42683676  T
Q  216 ctgtgataaataaaattagaaacaaggatcaatcaaacaagtgtgtataactctgaattgaagagatgaattcagcggtagttaact 302  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42683675 gtgtgataaataaaattagaaacaaggatcaatcaaacaagtgtgtatagctctgaattgaagagatgaattcagcggtagttaact 42683589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 4425992 - 4425875
Alignment:
Q  285 attcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtc 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||| ||||| |||||||  |||||    
T  4425992 attcagcggtagttaactgttgtcgggtcctcaacggtagttaagtactgttgggggcatttaagtattttacttgtgttattgtgaagttttcaatgtc 4425893  T
Q  385 aaaaaagcaattttcttt 402  Q
    | |||||||| |||||||    
T  4425892 agaaaagcaactttcttt 4425875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 34457018 - 34456935
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||| ||||||||||||| ||  ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||    
T  34457018 caacgatagttaactaccgctgagggcatttaagtattttacttgtgtctttataaagttttttatgtcaaaaaagcaattttc 34456935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 1481132 - 1481056
Alignment:
Q  323 agttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||| |||||| || |||||||||||||||||||||| ||   |||||||||||||||||||||||||||||    
T  1481132 agttaactatcgttgggggaatttaagtattttatttgtgtctttacgaagttttttatgtcaaaaaagcaattttc 1481056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 40614739 - 40614822
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaag-ttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||||||| | ||| ||||||||||||||||| ||||||| || | ||| ||||||||||||||||||||||||||    
T  40614739 aacggtagttaactactgctgggggcatttaagtattttacttgtgtctttatgaagtttttttatgtcaaaaaagcaattttc 40614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 31853746 - 31853667
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaatttt 398  Q
    ||||||||||||| || |||||  |||| | ||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  31853746 cggtagttaactatcgctggagatattttaatattttatttgtgtcattgtaaagttttcaatgtcagaaaagcaatttt 31853667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 389
Target Start/End: Original strand, 4424883 - 4424978
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaa 387  Q
    |||||||||||||||| ||||||||||||||||||||||||||||   ||||  |||||| |||||   |||||||| ||   |||||||||||||||||    
T  4424883 cagcggtagttaactgatgccgggtcctcaacggtagttaactac---tggaaacatttatgtatt---tttgtgtctttaggaagttttttatgtcaaa 4424976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 402
Target Start/End: Original strand, 31854228 - 31854316
Alignment:
Q  314 ctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttcttt 402  Q
    |||||||||| ||||||| || ||| |  |||| ||||||||| |||||||||||| ||||||  ||| ||||||||||||||||||||    
T  31854228 ctcaacggtaattaactatcgctggggatatttcagtattttacttgtgtcattgtgaagtttcctatatcaaaaaagcaattttcttt 31854316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 41474695 - 41474770
Alignment:
Q  292 ggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgt 369  Q
    |||||||||||||||| ||||| |||||||||||||||||| | || ||  |||||||||||||| ||||||||||||    
T  41474695 ggtagttaactgttgc-gggtcatcaacggtagttaactactgctgaagt-atttaagtattttacttgtgtcattgt 41474770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 31500863 - 31500779
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    ||||||| ||||||| ||| || |||||||| ||||||||| |||||||| | | |||||||   ||||| ||||||||||||||    
T  31500863 caacggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattttct 31500779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 31435032 - 31435111
Alignment:
Q  322 tagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    ||||||||||| | ||| |||||  | |||||||| ||||||| || | || |||| |||||||||||||||||||||||    
T  31435032 tagttaactactgctgggggcataaacgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattttctt 31435111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 44070823 - 44070781
Alignment:
Q  323 agttaactaccgttggaggcatttaagtattttatttgtgtca 365  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  44070823 agttaactaccgctggaggcatttacgtattttacttgtgtca 44070781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 400
Target Start/End: Original strand, 2121285 - 2121370
Alignment:
Q  315 tcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||||||||||||||||| | ||| ||||  ||| |||||||| |   |||| ||  ||||||||||| |||||||||    
T  2121285 tcaacggtagttaactaccgttggagactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaaacaattttct 2121370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 41474658 - 41474601
Alignment:
Q  342 catttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||| |||||||||||||| ||||| || ||||  ||||||||||| ||||||||    
T  41474658 catttaaatattttatttgtgttattgtgaaattttcaatgtcaaaaaaacaattttc 41474601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 15737932 - 15737888
Alignment:
Q  289 agcggtagttaactgttgccgggt-cctcaacggtagttaactac 332  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||    
T  15737932 agcggtagttaactgctgccggcttcctcaacggtagttaactac 15737888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 401
Target Start/End: Original strand, 30497764 - 30497892
Alignment:
Q  274 tgaagagatgaattcagcggtagttaactgttgccgggt-cctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaa 372  Q
    |||||| | ||||||||||| |||||||||  | ||| | || ||||||||||||||||||| ||   || ||| ||||  |||||| ||||| |  |||    
T  30497764 tgaagaaaggaattcagcggcagttaactgccggcggtttccccaacggtagttaactaccgctgtgagctttttagtaaattatttatgtcaatagaaa 30497863  T
Q  373 gttttttatgtcaaaaaagcaattttctt 401  Q
    || ||  ||||||||||||||||||||||    
T  30497864 gtattacatgtcaaaaaagcaattttctt 30497892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 31173457 - 31173381
Alignment:
Q  323 agttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||||||  ||| |||| ||| |||   ||||||||||| || |||| ||||||| |||||||||||||    
T  31173457 agttaactaccgttgagggcttttaggtaattttcatgtgtcattgtgaacttttgtatgtcagaaaagcaattttc 31173381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 269 - 402
Target Start/End: Original strand, 43036421 - 43036554
Alignment:
Q  269 tgaattgaagagatgaattcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattg 368  Q
    ||||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||    
T  43036421 tgaattgaagaaaagatttcagcggtagttaactgctgccgggtcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtgtcattg 43036520  T
Q  369 taaagttttttatgtcaaaaaagcaattttcttt 402  Q
    | ||||||||||||||||||||||||||||||||    
T  43036521 tgaagttttttatgtcaaaaaagcaattttcttt 43036554  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 292 - 399
Target Start/End: Original strand, 40729880 - 40729987
Alignment:
Q  292 ggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaag 391  Q
    |||||||||||| |||||| |||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||| |||||||  |||||| |||||    
T  40729880 ggtagttaactgctgccggttcctgaacggtagttaaataccgctggtggcatttaagtattttacttgtgtcattgtgaagttttcaatgtcagaaaag 40729979  T
Q  392 caattttc 399  Q
    ||||||||    
T  40729980 caattttc 40729987  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 317 - 402
Target Start/End: Original strand, 2333822 - 2333907
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttcttt 402  Q
    |||||| |||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  2333822 aacggttgttaacaaccgttgggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttcttt 2333907  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 43122854 - 43122932
Alignment:
Q  132 ttttacaggagaagaatcatatgttggaacccatgtgttagcaaggaaaaggaggatgaaagagagaggggaagaagaac 211  Q
    ||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  43122854 ttttacaggggaagaat-atatgttggaacccatgtgtgaggaaggaaaaggaggatgaaagagagaggggaagaagaac 43122932  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 396
Target Start/End: Complemental strand, 36505852 - 36505723
Alignment:
Q  271 aattgaagagatgaattcagcggtagttaactgttgccgggtcc-tcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcat--t 367  Q
    ||||||||| |||||||||||  ||||||||||  ||||| |   |||||||||||||||||||| ||| || ||||||||||||||||||||||||  |    
T  36505852 aattgaagaaatgaattcagc--tagttaactgccgccggatatgtcaacggtagttaactaccgctgggggtatttaagtattttatttgtgtcatagt 36505755  T
Q  368 gta---aagttttttatgtcaaaaaagcaatt 396  Q
    |||   ||||||||||||||||||||||||||    
T  36505754 gtagtgaagttttttatgtcaaaaaagcaatt 36505723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 32715352 - 32715269
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||||| ||||||| ||| ||||  |||||||||||| |   ||||||  |||||||||||||||||||||    
T  32715352 caacggtagttaactaccgctggaggctttttagtaaattatttgtgtcaataggaagtttcctatgtcaaaaaagcaattttc 32715269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 49818644 - 49818727
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||||  ||||||||| | ||||  ||| |||| ||||||||| |||||||| |||| |||||||||||||    
T  49818644 caacggtagttaactacctctggaggcatgttagtaaattacttgtatcattgtaatgttttttaagtcataaaagcaattttc 49818727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 48094422 - 48094505
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||| |||||| | || ||| ||||||||||||||||||||||||| |||| ||||||  ||||||| ||| |||| ||||    
T  48094422 caacggttgttaacaaacgatgggggcatttaagtattttatttgtgtccttgtgaagtttcctatgtcagaaaggcaaatttc 48094505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 50825945 - 50826015
Alignment:
Q  291 cggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgt 361  Q
    ||||||||||||  |||| |||||||||  |||||||||||||| | ||| ||||||||||||||| ||||    
T  50825945 cggtagttaacttctgccaggtcctcaatagtagttaactaccggtagagacatttaagtattttacttgt 50826015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 35430577 - 35430496
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||||||| ||  |||||  | |||||||| ||||||| || | || |||| ||||||||||||||||||||||    
T  35430577 cggtagttaactaccgctgagggcataaatgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattttct 35430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 1593858 - 1593905
Alignment:
Q  353 tttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||||||||    
T  1593858 tttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 1593905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 22436119 - 22436072
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtc 364  Q
    ||||| |||||||| ||| ||||||||||||||||||||| |||||||    
T  22436119 aacggcagttaactgccgctggaggcatttaagtattttacttgtgtc 22436072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 47110741 - 47110804
Alignment:
Q  314 ctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagtttt 377  Q
    ||||||||||||||||||||| | | || |||| ||||||||| |||||||| |||||| ||||    
T  47110741 ctcaacggtagttaactaccgctaggggtatttcagtattttacttgtgtcaatgtaaaatttt 47110804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 17045069 - 17045027
Alignment:
Q  341 gcatttaagtattttatttgtgtcattgtaaagttttttatgt 383  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  17045069 gcatttaagtattttacttgtgtcattgtgaagttttctatgt 17045027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 19438409 - 19438324
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    ||||||||||||||||||| ||| |||  || ||||  ||| |||||||||||| ||||| |  || ||| |||||||||||||||    
T  19438409 caacggtagttaactaccgctgggggctatttagtaaattacttgtgtcattgtgaagttctcaatatcataaaagcaattttctt 19438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 388
Target Start/End: Original strand, 25411667 - 25411736
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaa 388  Q
    |||||||||||||||| |||||| |||| ||||||||| ||||||  ||  ||||||||| |||| ||||    
T  25411667 cggtagttaactaccgctggaggtattttagtattttacttgtgtttttagaaagtttttgatgttaaaa 25411736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 43035846 - 43035765
Alignment:
Q  320 ggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||||||||||||||  || | |||||| |||||||| |||||||| ||| || || |  |||||| |||||||||||||||    
T  43035846 ggtagttaactaccgccggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattttctt 43035765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 31432645 - 31432617
Alignment:
Q  374 ttttttatgtcaaaaaagcaattttcttt 402  Q
    |||||||||||||||||||||||||||||    
T  31432645 ttttttatgtcaaaaaagcaattttcttt 31432617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 32296 - 32402
Alignment:
Q  289 agcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaa 388  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  32296 agcggtagttaactactgccgggtcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtgaag-tttttatgtcaaaa 32394  T
Q  389 aagcaatt 396  Q
    ||||||||    
T  32395 aagcaatt 32402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 29954 - 30060
Alignment:
Q  289 agcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaa 388  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| | | ||||||||||||||||| |||| ||||||| ||| ||||||||||||||    
T  29954 agcggtagttaactactgccgggtcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtatcattgtgaag-tttttatgtcaaaa 30052  T
Q  389 aagcaatt 396  Q
    ||||||||    
T  30053 aagcaatt 30060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 399
Target Start/End: Complemental strand, 24544 - 24432
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctc-aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaa 386  Q
    |||||| ||||||||||||||||    || ||||||||||||| |||||||| |||  ||| |||||||| |||||||| ||| || || |  |||||||    
T  24544 cagcggcagttaactgttgccggtatttccaacggtagttaaccaccgttgggggctattaggtattttacttgtgtcaatgtgaacttatcaatgtcaa 24445  T
Q  387 aaaagcaattttc 399  Q
    ||||| |||||||    
T  24444 aaaagaaattttc 24432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 288 - 399
Target Start/End: Complemental strand, 21761388 - 21761277
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaa 387  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| | | ||||||||  ||||||| || ||||| ||| |||||||||||||||||    
T  21761388 cagcggtagttaactgatgtcgggtcctcaacggtagttaactaccgctaggggcatttagatattttacttttgtcaatgtgaagttttttatgtcaaa 21761289  T
Q  388 aaagcaattttc 399  Q
    ||||||||||||    
T  21761288 aaagcaattttc 21761277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 37770306 - 37770195
Alignment:
Q  287 tcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaa 386  Q
    ||||||||||||||||| |  ||| ||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||  ||||||||||||||||    
T  37770306 tcagcggtagttaactgatatcggatcctcaacgatagttaactaccgttgggggcatttaagtattttacgtgtgtcattgcgaagttttttatgtcaa 37770207  T
Q  387 aaaagcaatttt 398  Q
    ||||| ||||||    
T  37770206 aaaagtaatttt 37770195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 18981596 - 18981486
Alignment:
Q  286 ttcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtca 385  Q
    ||||||||||||||||||| | |   || | ||||||||||||||| || ||| | ||||||||||||||| ||||||| ||   |||||||||||||||    
T  18981596 ttcagcggtagttaactgtcggcaattcttgaacggtagttaactatcgctggggacatttaagtattttacttgtgtctttaggaagttttttatgtca 18981497  T
Q  386 aaaaagcaatt 396  Q
    |||||||||||    
T  18981496 aaaaagcaatt 18981486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 33216412 - 33216334
Alignment:
Q  321 gtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||||| ||   |||||||||||||||| |||||||||||| |||||||  ||||||||||| ||||||||    
T  33216412 gtagttaactaccgctgagagcatttaagtattttacttgtgtcattgtgaagttttcaatgtcaaaaaaacaattttc 33216334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 12789718 - 12789643
Alignment:
Q  326 taactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||| ||||||||  |||||| ||||||||| |||||||||||| ||||||  ||||||| |||||||||||||||    
T  12789718 taacaaccgttgggagcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaattttctt 12789643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 45471484 - 45471403
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||||||| ||| |||||  | |||||||| || |||| || | ||||||| ||||||||||||||||||||||    
T  45471484 cggtagttaactaccgctgggggcataaacgtattttacttatgtctttatgaagttttctatgtcaaaaaagcaattttct 45471403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 18239531 - 18239448
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttcttt 402  Q
    |||| ||||||| ||||||| || |||| ||||||||| |||||||| |   ||||||| |||||||||||||||||| |||||    
T  18239531 cggttgttaactgccgttgggggtattttagtattttacttgtgtcaataggaagttttctatgtcaaaaaagcaattgtcttt 18239448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 33216985 - 33217038
Alignment:
Q  346 taagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||||||| ||||||| |||||||  |||||| |||||||||||||    
T  33216985 taagtattttatttgtatcattgtgaagttttcaatgtcagaaaagcaattttc 33217038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 15291232 - 15291184
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtca 365  Q
    |||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  15291232 aacggtagttaactaccgttgggggcgtttaagtaatttacttgtgtca 15291184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 26067166 - 26067242
Alignment:
Q  324 gttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    ||||||||||||||||| | ||| ||||  |||||| ||||| |  |||||||  ||||||||||||||||||||||    
T  26067166 gttaactaccgttggagactttttagtaaattatttatgtcaattgaaagtttcatatgtcaaaaaagcaattttct 26067242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 11701780 - 11701839
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagtt 375  Q
    ||||||||||||||||| |||||||||  || ||||  |||||||||| |||||||||||    
T  11701780 caacggtagttaactactgttggaggctatttagtaaattatttgtgttattgtaaagtt 11701839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 38043468 - 38043420
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtca 365  Q
    |||||||||||||||||| |||||| ||||| |||||||| || |||||    
T  38043468 aacggtagttaactaccgctggaggtatttatgtattttacttctgtca 38043420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 45475531 - 45475607
Alignment:
Q  324 gttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    ||||||||||||||||  || ||| |||  ||| || ||||||||| || |||| ||||||| ||||||||||||||    
T  45475531 gttaactaccgttggaaacaattatgtaaattacttatgtcattgtgaaattttctatgtcagaaaagcaattttct 45475607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 36759165 - 36759274
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaa 387  Q
    |||||||||||||| | | |||| ||||||||||||||||||||||| ||| |||||| | |||||||| |||||||| ||| |||||||||||||||||    
T  36759165 cagcggtagttaacggctaccggatcctcaacggtagttaactaccgctgggggcattcaggtattttacttgtgtcaatgtgaagttttttatgtcaaa 36759264  T
Q  388 aaagcaattt 397  Q
    ||||||||||    
T  36759265 aaagcaattt 36759274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 36758559 - 36758496
Alignment:
Q  271 aattgaagagatgaattcagcggtagttaactgttgccgggtcctcaacggtagttaactaccg 334  Q
    ||||||||| ||||||||||||||||||||||   || ||||||||||||||||||||||||||    
T  36758559 aattgaagaaatgaattcagcggtagttaactaccgctgggtcctcaacggtagttaactaccg 36758496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 43294279 - 43294196
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||||| | |||||||| | |||||||| ||||||| || | ||||||| |||||||||||| ||||||||    
T  43294279 caacggtagttaactaccgctagaggcattaacgtattttacttgtgtctttatgaagttttctatgtcaaaaaaacaattttc 43294196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 34458108 - 34458030
Alignment:
Q  286 ttcagcggtagttaactgttgccgggtcc-tcaacggtagttaactaccgttggaggcatttaagtattttatttgtgt 363  Q
    ||||||||||||||||| ||||||| | | |||||||||||||||||||| | ||| ||||||||||||||| ||||||    
T  34458108 ttcagcggtagttaactattgccggatacgtcaacggtagttaactaccgctagagccatttaagtattttacttgtgt 34458030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 5123798 - 5123687
Alignment:
Q  291 cggtagttaactgttgccgggt-cctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtc-attgtaaagttttttatgtc-aaa 387  Q
    |||||||||||||  | ||||| ||||||||| |||||||||||   ||||| |||||||||||||| |||||||  || | |||||||||||||| |||    
T  5123798 cggtagttaactgccgacgggttcctcaacggcagttaactaccaccggaggtatttaagtattttacttgtgtcttttatgaagttttttatgtcaaaa 5123699  T
Q  388 aaagcaattttc 399  Q
    ||||||||||||    
T  5123698 aaagcaattttc 5123687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 16291373 - 16291263
Alignment:
Q  289 agcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaa 388  Q
    |||||||||||||||||| | | || ||||||||| ||||||||| ||  || ||||||||||||||| || ||||||| | ||| |||  ||| || ||    
T  16291373 agcggtagttaactgttgtcagatcttcaacggtaattaactaccatttaagacatttaagtattttacttatgtcattatgaagatttcaatgacagaa 16291274  T
Q  389 aagcaattttc 399  Q
    |||||||||||    
T  16291273 aagcaattttc 16291263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 23067659 - 23067743
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||||||||||||||||| ||||||| |||||||| |||| |||||||| |   || ||||  |||||| |||||||||||||||    
T  23067659 aacggtagttaactaccgctggaggcgtttaagtaatttacttgtgtcaattggaacttttcaatgtcagaaaagcaattttctt 23067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 11822237 - 11822285
Alignment:
Q  353 tttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||||||||    
T  11822237 tttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttctt 11822285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 16291998 - 16292054
Alignment:
Q  322 tagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttt 378  Q
    ||||||||||| | ||||||||||||||||||||| |||||| ||||| || |||||    
T  16291998 tagttaactactgctggaggcatttaagtattttacttgtgttattgtgaaattttt 16292054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 1920177 - 1920232
Alignment:
Q  343 atttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaatttt 398  Q
    |||| |||||||||||||| | |||  |||||||||||||| ||||||||||||||    
T  1920177 attttagtattttatttgttttattaaaaagttttttatgttaaaaaagcaatttt 1920232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 26747777 - 26747694
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||| ||||||||||| ||||||| ||| ||||  ||| |||||||| |   ||||||  |||||||||||||||||||||    
T  26747777 caacggttgttaactaccgctggaggctttttagtaaattacttgtgtcaataggaagtttcctatgtcaaaaaagcaattttc 26747694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 400
Target Start/End: Complemental strand, 27808602 - 27808555
Alignment:
Q  353 tttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    ||||||||||||||||| || |||| ||||||| ||||||||||||||    
T  27808602 tttatttgtgtcattgtgaacttttgtatgtcagaaaagcaattttct 27808555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 36758511 - 36758446
Alignment:
Q  291 cggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtatttta 356  Q
    ||||||||||||   |||||||||||||| |||||||||||||| ||| | ||||| | |||||||    
T  36758511 cggtagttaactaccgccgggtcctcaacagtagttaactaccgctggggacattttaatatttta 36758446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 12075943 - 12075899
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgt 363  Q
    |||||||||||||||| |||||| |||| ||||||||| ||||||    
T  12075943 cggtagttaactaccgctggaggtattttagtattttacttgtgt 12075899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 286 - 399
Target Start/End: Complemental strand, 44006508 - 44006395
Alignment:
Q  286 ttcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtca 385  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||| ||| ||||||||||||||||| || ||||||||| || ||||  ||||||    
T  44006508 ttcagcggtagttaactgctgccggttcctgaacggtagttaactaccgctgggggcatttaagtattttacttatgtcattgtgaaattttcaatgtca 44006409  T
Q  386 aaaaagcaattttc 399  Q
     |||||||||||||    
T  44006408 gaaaagcaattttc 44006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 288 - 399
Target Start/End: Complemental strand, 44847067 - 44846956
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaa 387  Q
    ||||||||||||| || | |  ||||||||||||||||||||||||| |||||| |||||||||||||| |||||| | ||| |||||||  |||||| |    
T  44847067 cagcggtagttaattgctactaggtcctcaacggtagttaactaccgctggaggtatttaagtattttacttgtgttaatgtgaagttttcaatgtcaga 44846968  T
Q  388 aaagcaattttc 399  Q
    ||||||||||||    
T  44846967 aaagcaattttc 44846956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 44810660 - 44810741
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||  | |||| ||||||||||||||    
T  44810660 cggtagttaactaccgctggaggtatttaagtattttacttttgtcattgtaaagttttcaacgtcagaaaagcaattttct 44810741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 400
Target Start/End: Complemental strand, 38108854 - 38108771
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||| |   || |||||  ||||||||||||||||||||    
T  38108854 aacggtagttaactaccgctggaggtatttaagtattttacttgtgtcaataggaactttttattgtcaaaaaagcaattttct 38108771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 8262805 - 8262721
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    ||||| ||||||||||||||| | |||| | || ||||||| ||||||| || | ||||||||||||||||||| ||||||||||    
T  8262805 caacgatagttaactaccgttaggggcaataaattattttacttgtgtctttatgaagttttttatgtcaaaaatgcaattttct 8262721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 323 - 401
Target Start/End: Original strand, 4950857 - 4950934
Alignment:
Q  323 agttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    ||||||||||| |||  ||||||||||||||||| ||||||| || | ||| |||||||||||||||| ||||||||||    
T  4950857 agttaactaccattgagggcatttaagtattttacttgtgtctttatgaag-tttttatgtcaaaaaatcaattttctt 4950934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 42989915 - 42989803
Alignment:
Q  287 tcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaa 386  Q
    ||||| |||||||||||  | || |||||||||||||||||||||||| || | | |||||| ||||||| |||||||| | | ||||||| || || |     
T  42989915 tcagctgtagttaactgccgtcgagtcctcaacggtagttaactaccgctgaaagtatttaaatattttagttgtgtcaatatgaagttttctacgtgag 42989816  T
Q  387 aaaagcaattttc 399  Q
    |||| ||||||||    
T  42989815 aaaaacaattttc 42989803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 399
Target Start/End: Original strand, 42993462 - 42993546
Alignment:
Q  315 tcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||||| ||| | || ||| |||||||||||||| |||||||||||| |||||||  || ||| |||| ||||||||    
T  42993462 tcaacggtagttaaatactgctgaaggtatttaagtattttacttgtgtcattgtgaagttttcaatatcagaaaaacaattttc 42993546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 14336980 - 14336903
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaatt 396  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||  ||   |||||| | |||| ||||||||||||    
T  14336980 cggtagttaactaccgttggaagtattttagtattttatttgtgtttttaggaagtttatgatgttaaaaaagcaatt 14336903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 12515330 - 12515382
Alignment:
Q  349 gtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||||||| ||||||| || | ||||||| |||||||||||||||||||||||    
T  12515330 gtattttacttgtgtctttatgaagttttctatgtcaaaaaagcaattttctt 12515382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 400
Target Start/End: Complemental strand, 30715956 - 30715873
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||||||||| ||| || ||||| |||||||| |||||||| |   || |||  | ||||||||||||||||||||    
T  30715956 aacggtagttaactaccgctgggggtatttatgtattttacttgtgtcaataggaactttcatttgtcaaaaaagcaattttct 30715873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 37459774 - 37459728
Alignment:
Q  353 tttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||| |||||||| ||| ||||||| |||||||||||||||||||||    
T  37459774 tttacttgtgtcaatgtgaagttttctatgtcaaaaaagcaattttc 37459728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 51545282 - 51545240
Alignment:
Q  358 ttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||    
T  51545282 ttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 51545240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 2286026 - 2286106
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||| |||||||| |||||  |  |||||||  |||||| || | || |||| |||||||||||||||||||||    
T  2286026 cggtagttaacgaccgttgggggcataaacatattttacctgtgtctttatgaacttttctatgtcaaaaaagcaattttc 2286106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 18912259 - 18912339
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||  ||| ||||||||||| ||||||||| |||||||| | | || ||||   ||||| |||||||||||||    
T  18912259 cggtagttaacggccgctggaggcattttagtattttacttgtgtcaatatgaaattttcactgtcagaaaagcaattttc 18912339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 48165253 - 48165301
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtca 365  Q
    |||||| ||||||| |||||||||||||||| |||||||| || |||||    
T  48165253 aacggttgttaactgccgttggaggcatttacgtattttacttatgtca 48165301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 55146644 - 55146596
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtca 365  Q
    ||||||||||||||| |||||| || ||||| |||||||| ||||||||    
T  55146644 aacggtagttaactatcgttgggggtatttatgtattttaattgtgtca 55146596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 47317776 - 47317864
Alignment:
Q  311 gtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||    
T  47317776 gtcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattttc 47317864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 286 - 398
Target Start/End: Original strand, 27543683 - 27543795
Alignment:
Q  286 ttcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtca 385  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||||  ||||  |||| | ||||||| |||||| | |||||||||||| ||||||    
T  27543683 ttcagcggtagttaactgctgccggatcctcaacagtagttaactaccgcgggagatatttcaatattttacttgtgttaatgtaaagtttttaatgtca 27543782  T
Q  386 aaaaagcaatttt 398  Q
     ||||||||||||    
T  27543783 gaaaagcaatttt 27543795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 283 - 363
Target Start/End: Complemental strand, 27866928 - 27866848
Alignment:
Q  283 gaattcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgt 363  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||  ||||||||| ||||||| ||||||    
T  27866928 gaattcagcggtagttaactgctgccgggtcttcaacggtagttaactaccgctgagggcatttaaatattttacttgtgt 27866848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 18792623 - 18792707
Alignment:
Q  312 tcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaatt 396  Q
    |||| |||||||||||| ||| | ||||| ||||||||||||||| ||||||| || | ||||||||||||||||||||||||||    
T  18792623 tcctgaacggtagttaattactgctggagacatttaagtattttacttgtgtctttatgaagttttttatgtcaaaaaagcaatt 18792707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 27543077 - 27542969
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaa 387  Q
    |||||||||||||||| || ||| || | ||||||||||||||||| |||||||||||||||||||||| ||||||  |   ||  |||||||| |||||    
T  27543077 cagcggtagttaactgctgacggttcttgaacggtagttaactaccattggaggcatttaagtattttacttgtgttttaaaaatattttttatatcaaa 27542978  T
Q  388 aaagcaatt 396  Q
    |||||||||    
T  27542977 aaagcaatt 27542969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 18792042 - 18791965
Alignment:
Q  286 ttcagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgt 363  Q
    |||||||||||||||||| || |||||| |||| ||||||||||||| ||||  || |||||||||||||| ||||||    
T  18792042 ttcagcggtagttaactgctgtcgggtcttcaatggtagttaactactgttgatggtatttaagtattttacttgtgt 18791965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 20708282 - 20708207
Alignment:
Q  324 gttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||| |||| ||| ||||||| ||||||||| |||||||||||| ||||||  ||||||| |||||||||||||    
T  20708282 gttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaattttc 20708207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 20876326 - 20876251
Alignment:
Q  324 gttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||| |||| ||| ||||||| ||||||||| |||||||||||| ||||||  ||||||| |||||||||||||    
T  20876326 gttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaattttc 20876251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 47944384 - 47944467
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||| |||||| |||||||| |  |||||||||||||| |||||||||||| |||||| ||| |||| |||| ||||||||    
T  47944384 caacggttgttaacaaccgttggggatatttaagtattttacttgtgtcattgtgaagtttcttaggtcataaaaacaattttc 47944467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 47949814 - 47949897
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||| |||||| |||||||| |  |||||||||||||| |||||||||||| |||||| ||| |||| |||| ||||||||    
T  47949814 caacggttgttaacaaccgttggggatatttaagtattttacttgtgtcattgtgaagtttcttaggtcataaaaacaattttc 47949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 3615322 - 3615399
Alignment:
Q  322 tagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| |   |||| ||   |||||||||||||||||||    
T  3615322 tagttaactaccgttgggggcatttacgtattttatttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 3615399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 34192064 - 34192015
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtca 365  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  34192064 caacggttgttaactgccgttggaggcatttacgtattttatttgtgtca 34192015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 400
Target Start/End: Original strand, 1299065 - 1299149
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    ||||||||||||||||||| |||||||| |||  ||  |||||||||||| |   ||||||  ||||||||||||||||||||||    
T  1299065 caacggtagttaactaccgctggaggcaattatatacattatttgtgtcaataggaagtttcctatgtcaaaaaagcaattttct 1299149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 38653077 - 38653134
Alignment:
Q  342 catttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||||||||| || | || |||||||||| |||||| ||||||||    
T  38653077 catttaagtattttatttgtgtctttatgaaattttttatgtgaaaaaatcaattttc 38653134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 46790775 - 46790690
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctttaa 404  Q
    ||||||||||| |||| |||  ||||  | |||||||| ||||||| || | || |||| ||||||||||||||||||||||||||    
T  46790775 cggtagttaacaaccgctgggagcataaaggtattttacttgtgtctttatgaacttttctatgtcaaaaaagcaattttctttaa 46790690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 3614463 - 3614417
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgt 363  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||||    
T  3614463 aacggtagttaactaccgctgggggcatttacgtattttacttgtgt 3614417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 10555070 - 10555152
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||| ||||||| ||||||| | |||||| |||||||| |||||||| ||| || || |  |||||| |||||||||||||    
T  10555070 aacggttgttaactgccgttggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattttc 10555152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 27030617 - 27030687
Alignment:
Q  331 accgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||||||  ||||||||||||||||| || ||||| ||| ||||||  ||||||| |||| ||||||||||    
T  27030617 accgttgagggcatttaagtattttacttatgtcaatgtgaagtttcctatgtcagaaaaacaattttctt 27030687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 28985243 - 28985300
Alignment:
Q  282 tgaattcagcggtagttaactgttgccgg-gtcctcaacggtagttaactaccgttgg 338  Q
    |||||||||||||||||||||| ||||||  | | |||||||| ||||||||||||||    
T  28985243 tgaattcagcggtagttaactgctgccggtttgcccaacggtacttaactaccgttgg 28985300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 32473113 - 32473224
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaa 387  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||   |   ||||||||||||||||| |||||||  ||| |||||||||||||||||    
T  32473113 cagcggtagttaactgttgtcgggtcctcagcggtagttaactactacttagggcatttaagtattttacttgtgtcgatgtgaagttttttatgtcaaa 32473212  T
Q  388 aaagcaattttc 399  Q
    ||| ||||||||    
T  32473213 aaaacaattttc 32473224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 6253382 - 6253301
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||| ||||| | ||||||||||||||    
T  6253382 cggtagttaactaccgttgggggcatttaattattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttct 6253301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 6253552 - 6253664
Alignment:
Q  288 cagcggtagttaactgttgccgggtcctcaa-cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaa 386  Q
    |||||| |||||||||||| ||| | ||| | ||||||||||||||||  || | ||||||||||||||| |||||||||||| ||||||| ||||| |     
T  6253552 cagcggcagttaactgttgtcggtttctctagcggtagttaactaccgcgggggacatttaagtattttacttgtgtcattgtgaagttttctatgttag 6253651  T
Q  387 aaaagcaattttc 399  Q
    |||||||||||||    
T  6253652 aaaagcaattttc 6253664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 603031 - 602944
Alignment:
Q  314 ctcaacggtagttaactaccgttggaggcatttaagta--ttttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||| |||| ||||| ||||||||||||||||||||||  ||||| |||||||||||| |||||| |||||||| |||| ||||||||    
T  603031 ctcagcggtggttaattaccgttggaggcatttaagtattttttacttgtgtcattgtgaagtttcttatgtcagaaaatcaattttc 602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 33073760 - 33073676
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttct 400  Q
    ||||||| |||||| |||| ||||||||||||||||||||| |||||| ||||| ||||||  ||||||| |||||||| |||||    
T  33073760 caacggttgttaacaaccgctggaggcatttaagtattttacttgtgttattgtgaagtttcctatgtcagaaaagcaaatttct 33073676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 32472522 - 32472429
Alignment:
Q  271 aattgaagagatgaattcagcggtagttaactgttgccg---ggtcctcaacggtagttaactaccgttggaggcatttaagtattttatttgt 361  Q
    ||||||||| ||||||||||||||| |||||||  | ||   |||||||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  32472522 aattgaagaaatgaattcagcggtaattaactgccgtcgttgggtcctcaacggtagttaactaccgcgggaggcattttagtattttacttgt 32472429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 320 - 398
Target Start/End: Complemental strand, 5772867 - 5772789
Alignment:
Q  320 ggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaatttt 398  Q
    |||||||||||||||||   |||||| | |||||||||||||||| || | | ||||||||||||||||||||||||||    
T  5772867 ggtagttaactaccgttaagggcattaacgtattttatttgtgtctttatgaggttttttatgtcaaaaaagcaatttt 5772789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 20086227 - 20086272
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtc 364  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  20086227 cggtagttaactaccgctggaggcatttaagtattttatttgtgtc 20086272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 234008 - 233929
Alignment:
Q  320 ggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||| |    |||||||||||||||| |||||||||| | ||||||||||| ||| |||||||||||||    
T  234008 ggtagttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 233929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 710419 - 710340
Alignment:
Q  320 ggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||| |    |||||||||||||||| |||||||||| | ||||||||||| ||| |||||||||||||    
T  710419 ggtagttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 710340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 747631 - 747552
Alignment:
Q  320 ggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||| |    |||||||||||||||| |||||||||| | ||||||||||| ||| |||||||||||||    
T  747631 ggtagttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 747552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 871526 - 871447
Alignment:
Q  320 ggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||| |    |||||||||||||||| |||||||||| | ||||||||||| ||| |||||||||||||    
T  871526 ggtagttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 871447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 44374100 - 44373990
Alignment:
Q  291 cggtagttaactgttgccgggtcc-tcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaa 389  Q
    |||||||||| ||||||||| |   |||| |||||||||||||||||||||| | || |||  |||| |||||||||||| ||||| |  |||||| |||    
T  44374100 cggtagttaattgttgccggatatatcaatggtagttaactaccgttggaggtaatttagtcatttacttgtgtcattgtgaagttatgaatgtcagaaa 44374001  T
Q  390 agcaattttct 400  Q
    |||||||||||    
T  44374000 agcaattttct 44373990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 603738 - 603816
Alignment:
Q  322 tagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    ||||||||||||| ||| || ||||||||||||||  |||||  || | ||| |||||||||||||||||||||| ||||    
T  603738 tagttaactaccgctgggggtatttaagtattttacgtgtgtatttatgaag-tttttatgtcaaaaaagcaattgtctt 603816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 16583273 - 16583186
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttcttta 403  Q
    ||||||||||||||||||| ||| ||| ||| ||||  ||| |||||||| |   |||| ||  ||||||||||||||||||||||||    
T  16583273 caacggtagttaactaccgctgggggctttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaattttcttta 16583186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 34677000 - 34676917
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||| ||| |  ||||||||||||||||  |||||  || | ||||||||||||| | |||||||| ||||    
T  34677000 caacggtagttaactactgttcggagcatttaagtattttacatgtgtttttatgaagttttttatgttagaaaagcaactttc 34676917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 45120729 - 45120804
Alignment:
Q  324 gttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||| ||| ||| | || ||||||| |||| |||||||||||| || |||| ||||||| |||||||||||||    
T  45120729 gttaactgccgctggggacaattaagtaatttacttgtgtcattgtgaacttttctatgtcagaaaagcaattttc 45120804  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 775704 - 775658
Alignment:
Q  288 cagcggtagttaactgttgccgggt-cctcaacggtagttaactacc 333  Q
    |||||| |||||||||||||||| | |||||||||||||||||||||    
T  775704 cagcggcagttaactgttgccggcttcctcaacggtagttaactacc 775658  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 781358 - 781312
Alignment:
Q  288 cagcggtagttaactgttgccgggt-cctcaacggtagttaactacc 333  Q
    |||||| |||||||||||||||| | |||||||||||||||||||||    
T  781358 cagcggcagttaactgttgccggcttcctcaacggtagttaactacc 781312  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 17443370 - 17443420
Alignment:
Q  353 tttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttcttta 403  Q
    |||| |||||||||||| ||||||| ||||||| |||| ||||||||||||    
T  17443370 tttacttgtgtcattgtgaagttttctatgtcagaaaaacaattttcttta 17443420  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 34587735 - 34587657
Alignment:
Q  297 ttaactgttgccgggtc-ctcaacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagt 374  Q
    ||||||| ||||||||  || |||||||||||||||||||||||||| |||||| | |||   ||||||||||| ||||    
T  34587735 ttaactgctgccgggttgctgaacggtagttaactaccgttggaggcttttaagcaattttcatgtgtcattgtgaagt 34587657  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 23231306 - 23231383
Alignment:
Q  324 gttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    ||||||| ||| |||||||  ||| ||| |||| |||||||||||| || |||| ||||||| |||| ||||||||||    
T  23231306 gttaactgccgctggaggctattaggtaatttacttgtgtcattgtgaacttttctatgtcagaaaaacaattttctt 23231383  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 8816592 - 8816668
Alignment:
Q  323 agttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||| |||||| | || |||  ||||||||||||| ||| || ||||| |||| | |||||||||||||    
T  8816592 agttaactaccgctggaggtaatttagtcatttatttgtgtcaatgtgaactttttgatgttagaaaagcaattttc 8816668  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 18700888 - 18700844
Alignment:
Q  289 agcggtagttaactgttgccgggt-cctcaacggtagttaactac 332  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||    
T  18700888 agcggtagttaactgctgccggcttcctcaacggtagttaactac 18700844  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 2435254 - 2435332
Alignment:
Q  321 gtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||| |||||  ||||||||||||| ||| |||||||||| || | ||||||||||||||||||||| |||||||    
T  2435254 gtagttaattaccgcgggaggcatttaagaattgtatttgtgtctttatgaagttttttatgtcaaaaaagtaattttc 2435332  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 16185346 - 16185429
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||||| ||| | ||||| ||||||| ||||||||  ||  |||| ||||||||| |||||||||||||||    
T  16185346 caacggtagttaactaccgctggggacattttagtatttcatttgtgtttttagaaagctttttatgttaaaaaagcaattttc 16185429  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 31860708 - 31860790
Alignment:
Q  319 cggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||| ||||||| ||| ||| |||| ||| ||  |||| |||||||||||| ||||||| ||||||| |||||||||||||||    
T  31860708 cggttgttaactgccgctgggggcaattatgtcatttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttctt 31860790  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 19268382 - 19268327
Alignment:
Q  344 tttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||||||||||||||||||| |||||| || |  |||| |||||||||||||||    
T  19268382 tttaagtattttatttgtgtcaatgtaaacttatcaatgtgaaaaaagcaattttc 19268327  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 33523896 - 33523978
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    |||||| ||||||||||| ||| ||||| || |||||||| |||||||| ||| || || |  |||||| |||||||||||||    
T  33523896 aacggttgttaactaccgctgggggcatataggtattttacttgtgtcaatgtgaacttatcaatgtcataaaagcaattttc 33523978  T

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Target: scaffold0325 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 2896 - 2813
Alignment:
Q  316 caacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttc 399  Q
    ||||||||||||||||||| ||  |||||| | |||||||| || ||||  | | ||||||| |||||||||||||||||||||    
T  2896 caacggtagttaactaccgctgtgggcattaacgtattttacttatgtctatatgaagttttctatgtcaaaaaagcaattttc 2813  T

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Target: scaffold0915 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 749 - 806
Alignment:
Q  282 tgaattcagcggtagttaactgttgccgg-gtcctcaacggtagttaactaccgttgg 338  Q
    |||||||||||||||||||||| ||||||  | | |||||||| ||||||||||||||    
T  749 tgaattcagcggtagttaactgctgccggtttgcccaacggtacttaactaccgttgg 806  T

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Target: scaffold0688 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 5913 - 5997
Alignment:
Q  317 aacggtagttaactaccgttggaggcatttaagtattttatttgtgtcattgtaaagttttttatgtcaaaaaagcaattttctt 401  Q
    |||||| ||| ||||||| |||  ||||||| |||||||| |||||||| |  ||| ||||  |||||| |||||||||||||||    
T  5913 aacggttgtttactaccgctgggagcatttacgtattttacttgtgtcaattgaaacttttcaatgtcagaaaagcaattttctt 5997  T

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