View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_high_20 (Length: 240)
Name: NF19092_high_20
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43352493 - 43352714
Alignment:
| Q |
1 |
ataaaatctaaatgtgtagaaacacttgttttatgtttggattttaatttgattgggtaaaaatccttnnnnnnnncagcttgtcacagagtttaacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
43352493 |
ataaaatctaaatgtgtagaaacacttgttttatgtttggattttaatttgattgggtaaaaatccttaaaaaaaacagcttgtca--gagtttaacttt |
43352590 |
T |
|
| Q |
101 |
ggctaaaacaaccatgattaaatttttctctttaaaaatagcaaaaatgctcattttgaattataaagttcgaaaatctaagaatatttctggttttcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
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| T |
43352591 |
ggctaaaacaaccatgattaaatttttctctttaaaaatagcaaaaatgctcattttgaattataatgttcgaaaatctaagaatatttctgggttttga |
43352690 |
T |
|
| Q |
201 |
gaggacgcacgaaaggataaagag |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
43352691 |
gaggacgcacgaaaggataaagag |
43352714 |
T |
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