View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_high_26 (Length: 221)
Name: NF19092_high_26
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35384175 - 35383961
Alignment:
| Q |
1 |
taccaaataaaaatagtacttaccaccaatnnnnnnncaaatataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacg |
100 |
Q |
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| T |
35384175 |
taccaaataaaaatagtacttaccaccaataaaaaaacaaatataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacg |
35384076 |
T |
|
| Q |
101 |
tttatgaaacatagtacattttgcaaagtgaacaaataaattgaactatttgaattaaatttgagccctatagatcaagaatcatcatggtcattaaact |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35384075 |
tttatgaaacatagtacattttgcaaagggaacaaataaattgagctatttgaattaaatttgagccctatagatcaagaatcatcatggtcattaaact |
35383976 |
T |
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| Q |
201 |
taaaggcctttgcta |
215 |
Q |
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||||||||||||||| |
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| T |
35383975 |
taaaggcctttgcta |
35383961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 35388021 - 35387865
Alignment:
| Q |
1 |
taccaaataaaaatagtacttaccaccaatnnnnnnncaaatataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35388021 |
taccaaataaaaatagtacttaccaccaataaaaa---aaatataacagggaataaattgaattaaataaaatcttgtataagctaaaggtattgcaaca |
35387925 |
T |
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| Q |
101 |
tttatgaaacatagtacattttgcaaagtgaacaaataaattgaactatttgaattaaat |
160 |
Q |
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||| |||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
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| T |
35387924 |
tttctgaaacatagtacattttgcaaaggggacaaataaattgagctatttgaattaaat |
35387865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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