View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_high_3 (Length: 583)
Name: NF19092_high_3
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 17109924 - 17110266
Alignment:
| Q |
22 |
tcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttaca |
121 |
Q |
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| T |
17109924 |
tcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttaca |
17110023 |
T |
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| Q |
122 |
gattttggggaactgtccattccttttagaaagatgcaagaaaccttatggaaagga-----------ttgcgcatattcaatgtataatgattgacgat |
210 |
Q |
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| T |
17110024 |
gatttcggggaactgtccattccttttagaaagatgcaagaaaccttatggaaaggattgcgagaggattgcgcatattcaatgtataatgattgacgat |
17110123 |
T |
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| Q |
211 |
cctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagattta |
310 |
Q |
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| T |
17110124 |
cctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagattta |
17110223 |
T |
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| Q |
311 |
tattcaaatagtatttacttgaactggacccactttaaaatga |
353 |
Q |
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| T |
17110224 |
tattcaaatagtatttacttgaactggacccactttaaaatga |
17110266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 352 - 573
Target Start/End: Original strand, 17110288 - 17110509
Alignment:
| Q |
352 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcccaagtgggtaataatataaatcaatacagttgg |
451 |
Q |
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| T |
17110288 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcctaagtgggtaataatataaatcaatacagttgg |
17110387 |
T |
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| Q |
452 |
agacgtacacacaattggccgagcttaattagttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
551 |
Q |
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| T |
17110388 |
agacgtacacgcaattggccgagcttaattagttaccaaacgtcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
17110487 |
T |
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| Q |
552 |
ttctaacactatctgatctgtg |
573 |
Q |
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| T |
17110488 |
ttctaacactatctgatctgtg |
17110509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 572
Target Start/End: Original strand, 17126147 - 17126221
Alignment:
| Q |
497 |
tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctgatctgt |
572 |
Q |
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| T |
17126147 |
tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctgatctgt |
17126221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 559
Target Start/End: Original strand, 35052192 - 35052265
Alignment:
| Q |
484 |
ttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaaca |
559 |
Q |
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| T |
35052192 |
ttaccaaacaacgtgtgttcattgtttgcg-tttttcgtatctttattcttttgaaccgga-ttgctgttctaaca |
35052265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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