View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_10 (Length: 322)
Name: NF19092_low_10
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 48469164 - 48469480
Alignment:
| Q |
1 |
ccagttaccacaataattcctctnnnnnnnnngttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgtttttatttgcatgaaat |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48469164 |
ccagttaccacaataattcctctaaaaaaaaagttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgttttcatttgcatgaaat |
48469263 |
T |
|
| Q |
101 |
ttttcagaaacatgaatttccaaatgataccttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469264 |
ttttcagaaacatgaatttccaaatgataccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagtttt |
48469363 |
T |
|
| Q |
201 |
attgtgagataatcaaatactatcaaattagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48469364 |
attgtgagataatcaaatactatcaaatcagaaccattttcattgagaccttcgtcaggtgctgataaatgtatcctcaatctgtacatcattcttgtaa |
48469463 |
T |
|
| Q |
301 |
tagttatctctgctcct |
317 |
Q |
| |
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|||| ||| ||| |||| |
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| T |
48469464 |
tagtaatcactgttcct |
48469480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 48477488 - 48477804
Alignment:
| Q |
1 |
ccagttaccacaataattcctctnnnnnnnnngttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgtttttatttgcatgaaat |
100 |
Q |
| |
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|||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
48477488 |
ccagttaccacagtaattcctctaaaataaaagttaccacggtaattgtcaattttgctaatcttcaattttcatatcacagtttttatttgcatgaaat |
48477587 |
T |
|
| Q |
101 |
ttttcagaaacatgaatttccaaatgataccttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagtttt |
200 |
Q |
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| T |
48477588 |
atttcacaaacaggagtttccaaatgttaccttgtacactgcaccaaatccaccctctccaaccttattttctgttgagaagtaacttgttgcaagtttt |
48477687 |
T |
|
| Q |
201 |
attgtgagataatcaaatactatcaaattagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477688 |
attgtgagataatcaaatactatcaaatcagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaa |
48477787 |
T |
|
| Q |
301 |
tagttatctctgctcct |
317 |
Q |
| |
|
|||||||| ||| |||| |
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| T |
48477788 |
tagttatcactgttcct |
48477804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 48884551 - 48884368
Alignment:
| Q |
121 |
caaatgataccttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatac |
220 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||| | |||||||||||||||||||||||| |
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| T |
48884551 |
caaatgttaccttgtacactgcaccaaatccaccctctccggccttattttcttttgagaagtaacctcttgctacttttattgtgagataatcaaatac |
48884452 |
T |
|
| Q |
221 |
tatcaaattagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaatagttatc |
308 |
Q |
| |
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| T |
48884451 |
tatcaaatcagaaccatttcc----agatcttcttcaggtgctgataaatgtatcctcaatctgtacatcattcttgtaatagttatc |
48884368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 48485265 - 48485533
Alignment:
| Q |
33 |
gttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgtttttatttgcatgaaatttttcagaaaca--tgaatttccaaatgatac |
130 |
Q |
| |
|
|||| ||||| |||||| || ||| ||||||||||||||||||||||| |||| ||||| |||||||| ||||| |||| || |||| || ||| ||| |
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| T |
48485265 |
gttatcacagtaattgtgaacttttctaatcttcaatttacatttcacagtttctattt-catgaaatatttcaccaacagatgtattttcatatgttac |
48485363 |
T |
|
| Q |
131 |
cttgtatactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaatta |
230 |
Q |
| |
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|||||| ||| ||||||||||||||||||||| |||||||||||||||||||| | |||||| | ||| ||||||||||||| ||||||||| |||| | |
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| T |
48485364 |
cttgtacactacaccaaatccaccctctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatca |
48485463 |
T |
|
| Q |
231 |
gaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaa |
300 |
Q |
| |
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||||||||| ||||||||||||| |||| ||||||||||| |||||||| | |||| | ||||||||||| |
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| T |
48485464 |
gaaccatttccattgagatcttcttcagctgctgataaatatatcctcattttgtatatcattcttgtaa |
48485533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 44 - 319
Target Start/End: Complemental strand, 38818078 - 38817800
Alignment:
| Q |
44 |
aattgtcaattttgctaatcttcaatttacatttcaccgtttttattt-gcatgaaatttttcagaaaca--tgaatttccaaatgataccttgtatact |
140 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||||||||| |||| ||||| ||||||||| ||||||||||| |||||||||||||| ||||||||| ||| |
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| T |
38818078 |
aattctcaactttgttaatcttgaatttacatttcacagtttctatttagcatgaaatatttcagaaacacgtgaatttccaaatgttaccttgtacact |
38817979 |
T |
|
| Q |
141 |
gcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaattagaaccatttt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38817978 |
gcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaatcagaaccatttt |
38817879 |
T |
|
| Q |
241 |
cattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaatagttatctctgctcctac |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||||| |
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| T |
38817878 |
cattgagatcttcgtcaggtgctgataaatgtatccccaatctgtacatcattcttgtaatagtaatcactgttcctac |
38817800 |
T |
|
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