View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19092_low_11 (Length: 294)

Name: NF19092_low_11
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19092_low_11
NF19092_low_11
[»] chr4 (29 HSPs)
chr4 (14-279)||(17133982-17134255)
chr4 (157-200)||(20098773-20098816)
chr4 (154-200)||(18509535-18509581)
chr4 (143-201)||(41520940-41520998)
chr4 (157-201)||(6520071-6520115)
chr4 (157-201)||(21317355-21317399)
chr4 (157-201)||(45970724-45970768)
chr4 (158-201)||(17423194-17423237)
chr4 (162-201)||(38934883-38934922)
chr4 (158-201)||(48171882-48171925)
chr4 (156-194)||(14076577-14076615)
chr4 (151-201)||(19908686-19908736)
chr4 (159-201)||(21318270-21318312)
chr4 (151-197)||(54500563-54500609)
chr4 (151-201)||(56204941-56204991)
chr4 (157-201)||(2434475-2434519)
chr4 (157-201)||(7030910-7030954)
chr4 (157-201)||(7922267-7922311)
chr4 (157-201)||(13276129-13276173)
chr4 (157-201)||(20799411-20799455)
chr4 (157-201)||(29908056-29908100)
chr4 (157-201)||(38374957-38375001)
chr4 (157-201)||(38453265-38453309)
chr4 (156-200)||(40847085-40847129)
chr4 (157-201)||(42316841-42316885)
chr4 (157-201)||(42845025-42845069)
chr4 (157-201)||(43034359-43034403)
chr4 (157-201)||(50362156-50362200)
chr4 (157-201)||(51002287-51002331)
[»] chr6 (18 HSPs)
chr6 (157-201)||(331903-331947)
chr6 (157-201)||(16403975-16404019)
chr6 (158-200)||(33969866-33969908)
chr6 (157-201)||(12412277-12412321)
chr6 (157-201)||(29335592-29335636)
chr6 (151-201)||(1918475-1918525)
chr6 (155-197)||(2617226-2617268)
chr6 (155-200)||(1377720-1377765)
chr6 (155-200)||(1385468-1385513)
chr6 (160-201)||(29283818-29283859)
chr6 (155-199)||(361752-361796)
chr6 (157-201)||(3808135-3808179)
chr6 (157-201)||(8381211-8381255)
chr6 (157-197)||(8840541-8840581)
chr6 (157-197)||(9329701-9329741)
chr6 (157-201)||(10780124-10780168)
chr6 (157-201)||(24373727-24373771)
chr6 (152-200)||(32524438-32524486)
[»] chr5 (26 HSPs)
chr5 (154-201)||(11720891-11720938)
chr5 (151-200)||(18619030-18619079)
chr5 (157-197)||(1512855-1512895)
chr5 (157-197)||(27219288-27219328)
chr5 (157-201)||(30893933-30893977)
chr5 (157-201)||(33654748-33654792)
chr5 (151-197)||(40027785-40027831)
chr5 (154-200)||(40056608-40056654)
chr5 (156-197)||(9123866-9123907)
chr5 (152-201)||(17046329-17046378)
chr5 (157-201)||(6237736-6237780)
chr5 (157-201)||(6489007-6489051)
chr5 (157-201)||(6624776-6624820)
chr5 (157-197)||(8682415-8682455)
chr5 (157-201)||(15889411-15889455)
chr5 (157-201)||(20175827-20175871)
chr5 (157-201)||(22498942-22498986)
chr5 (157-201)||(25509311-25509355)
chr5 (157-197)||(28447493-28447533)
chr5 (157-201)||(32200464-32200508)
chr5 (157-201)||(34206227-34206271)
chr5 (157-201)||(34436851-34436895)
chr5 (157-201)||(35109400-35109444)
chr5 (157-201)||(37614444-37614488)
chr5 (151-191)||(39529441-39529481)
chr5 (157-201)||(41650956-41651000)
[»] chr3 (22 HSPs)
chr3 (158-201)||(20079723-20079766)
chr3 (151-201)||(2078234-2078284)
chr3 (157-201)||(10922325-10922369)
chr3 (157-197)||(33633339-33633379)
chr3 (157-200)||(23525139-23525182)
chr3 (154-201)||(38130976-38131023)
chr3 (157-200)||(52535883-52535926)
chr3 (155-201)||(19468449-19468495)
chr3 (151-201)||(32909318-32909368)
chr3 (151-201)||(48849780-48849829)
chr3 (160-201)||(8075788-8075829)
chr3 (152-201)||(17278317-17278366)
chr3 (156-197)||(22843463-22843504)
chr3 (157-194)||(49787687-49787724)
chr3 (157-197)||(7464512-7464552)
chr3 (157-201)||(7738669-7738713)
chr3 (157-201)||(17588362-17588406)
chr3 (157-201)||(18870742-18870786)
chr3 (157-201)||(30050445-30050489)
chr3 (157-201)||(33223868-33223912)
chr3 (157-201)||(49600281-49600325)
chr3 (157-201)||(51882217-51882261)
[»] chr1 (27 HSPs)
chr1 (157-200)||(5270758-5270801)
chr1 (157-201)||(2889943-2889987)
chr1 (157-201)||(5280631-5280675)
chr1 (151-195)||(6842307-6842351)
chr1 (157-197)||(15729430-15729470)
chr1 (157-201)||(40818607-40818651)
chr1 (157-201)||(47961306-47961350)
chr1 (156-199)||(619427-619470)
chr1 (154-197)||(33153901-33153944)
chr1 (158-197)||(43284051-43284090)
chr1 (167-201)||(13775628-13775662)
chr1 (155-201)||(28039877-28039923)
chr1 (151-201)||(28832188-28832238)
chr1 (157-201)||(1091179-1091223)
chr1 (157-201)||(1794596-1794640)
chr1 (157-201)||(5907799-5907843)
chr1 (157-197)||(7925364-7925404)
chr1 (157-197)||(11242006-11242046)
chr1 (157-201)||(14880828-14880872)
chr1 (157-201)||(21400040-21400084)
chr1 (157-201)||(23397340-23397384)
chr1 (157-197)||(30678834-30678874)
chr1 (157-201)||(32950778-32950822)
chr1 (157-197)||(36371061-36371101)
chr1 (157-197)||(48131249-48131289)
chr1 (157-201)||(49875616-49875660)
chr1 (157-201)||(52441528-52441572)
[»] chr8 (16 HSPs)
chr8 (151-201)||(42700499-42700549)
chr8 (160-201)||(7679905-7679946)
chr8 (157-201)||(15079169-15079213)
chr8 (157-201)||(37015853-37015897)
chr8 (159-201)||(11052978-11053020)
chr8 (155-201)||(40512647-40512693)
chr8 (156-201)||(13105093-13105138)
chr8 (157-201)||(1877679-1877723)
chr8 (157-201)||(7553679-7553723)
chr8 (157-201)||(11708986-11709030)
chr8 (157-201)||(13286131-13286175)
chr8 (157-201)||(13357458-13357502)
chr8 (157-197)||(15188899-15188939)
chr8 (157-197)||(21557433-21557473)
chr8 (157-201)||(28084282-28084326)
chr8 (157-201)||(39821884-39821928)
[»] chr2 (20 HSPs)
chr2 (155-201)||(41311982-41312028)
chr2 (152-201)||(31815904-31815953)
chr2 (157-201)||(7206125-7206169)
chr2 (156-200)||(10058870-10058914)
chr2 (157-201)||(22608527-22608571)
chr2 (157-197)||(27412857-27412897)
chr2 (157-201)||(37320534-37320578)
chr2 (154-201)||(27152350-27152397)
chr2 (154-197)||(28644522-28644565)
chr2 (155-201)||(4897541-4897587)
chr2 (155-201)||(4944935-4944981)
chr2 (156-201)||(18324911-18324956)
chr2 (152-201)||(20565092-20565141)
chr2 (157-201)||(2256971-2257015)
chr2 (157-201)||(5676739-5676783)
chr2 (159-199)||(15939294-15939334)
chr2 (153-201)||(20120738-20120786)
chr2 (157-201)||(34977204-34977248)
chr2 (160-196)||(43484687-43484723)
chr2 (157-201)||(45032693-45032737)
[»] chr7 (18 HSPs)
chr7 (156-201)||(1627952-1627997)
chr7 (156-197)||(23221391-23221432)
chr7 (149-201)||(3948046-3948098)
chr7 (157-201)||(8879764-8879808)
chr7 (157-201)||(30463388-30463432)
chr7 (154-201)||(22991408-22991455)
chr7 (154-201)||(37516819-37516866)
chr7 (158-200)||(24559494-24559536)
chr7 (155-201)||(25923389-25923435)
chr7 (159-197)||(34809347-34809385)
chr7 (156-201)||(6384850-6384895)
chr7 (157-201)||(8683070-8683114)
chr7 (157-201)||(15913551-15913595)
chr7 (149-201)||(18505674-18505726)
chr7 (157-197)||(22267581-22267621)
chr7 (157-201)||(42435415-42435459)
chr7 (157-201)||(44454512-44454556)
chr7 (157-201)||(48007564-48007608)
[»] scaffold1063 (1 HSPs)
scaffold1063 (157-197)||(1081-1121)
[»] scaffold0777 (1 HSPs)
scaffold0777 (157-196)||(3129-3168)
[»] scaffold0238 (1 HSPs)
scaffold0238 (157-201)||(25389-25433)
[»] scaffold0126 (1 HSPs)
scaffold0126 (157-201)||(34905-34949)
[»] scaffold0050 (1 HSPs)
scaffold0050 (157-201)||(53397-53441)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 17133982 - 17134255
Alignment:
Q  14 gaattaacggaaaacaacacattcgatgatgtcttgatggccaatgattcatttatgatagtggataatttcttcattacaaaaatagtgggaaataaat 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17133982 gaattaacggagaacaacacattcgatgatgtcttgatggccaatgattcatttatgatagtggataatttcttcattacaaaaatagtgggaaatcaat 17134081  T
Q  114 ttgtatcactttagaagcgctgtcaaaggatttaaccgttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaa--------gttgt 205  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || | ||||||||||||||||||||  ||        |||||    
T  17134082 ttgtatcactttagaagcgctgtcaaaggacttaaccgttctcgtgagcttaactcaattggtagagacaatgcataatatatataaggtctggggttgt 17134181  T
Q  206 aatggggcattacagttgtaacgacttgacaatatcaattctagttgttacaccttgtgcacttgaatagtttt 279  Q
    || | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17134182 aacgagacattagagttgtaacgacttgacaatatcaattctagttgttacaccttgtgcacttgaatagtttt 17134255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 20098816 - 20098773
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  20098816 gtgagcttaactcagttggcagagacaatacataatatatgcaa 20098773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 18509581 - 18509535
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    |||||||||||| |||| ||| |||||||||||||||||||||||||    
T  18509581 cttgtgagcttagctcaattaacagagacaatgcataatatatgcaa 18509535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 41520940 - 41520998
Alignment:
Q  143 atttaaccgttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||| ||  | |||||||||||||| | |||||||||||||||||||||||||    
T  41520940 atttaaccgtcctcataagcttaactcagttggtagagacaatgcataatatatgcaag 41520998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 6520071 - 6520115
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| |||||||||||||| | |||||||||||||||||||||||    
T  6520071 gtgatcttaactcagttagtaaagacaatgcataatatatgcaag 6520115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 21317399 - 21317355
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||    
T  21317399 gtgagcttagctcagttggtagagacaatgcataatatatgcaag 21317355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 45970768 - 45970724
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||    
T  45970768 gtgagcttaactcagttggtagaaacaatgcataatatatgcaag 45970724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 17423237 - 17423194
Alignment:
Q  158 tgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| ||||||||||| | |||||||||||||||||||||||||    
T  17423237 tgaggttaactcagttggtagagacaatgcataatatatgcaag 17423194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 38934883 - 38934922
Alignment:
Q  162 cttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  38934883 cttaactcagttattagagacaatgcataatatatgcaag 38934922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 48171882 - 48171925
Alignment:
Q  158 tgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||| | |||||||||| ||||||||||||||    
T  48171882 tgagcttaactcagttggtagagacaatgtataatatatgcaag 48171925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 14076615 - 14076577
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatat 194  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  14076615 tgtgagcttaactcagttagtagagacaatacataatat 14076577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 19908686 - 19908736
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| |||||||||||||||||| | |  ||||||||||||||||||||||    
T  19908686 gttcctgtgagcttaactcagttggtaaggacaatgcataatatatgcaag 19908736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 21318312 - 21318270
Alignment:
Q  159 gagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||| | || ||||||||||||||||||||||    
T  21318312 gagcttaactcagttggtagggacaatgcataatatatgcaag 21318270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 54500563 - 54500609
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||| ||||||||| ||||||| | |||||||||||||||||||||    
T  54500563 gttctcgtgagcttagctcagttggtagagacaatgcataatatatg 54500609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 56204941 - 56204991
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||| ||||||||||| | |  ||||||||||||||||||||||    
T  56204941 gttcttgtgagtttaactcagttggtaaggacaatgcataatatatgcaag 56204991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 2434519 - 2434475
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |||||| ||||||| ||||||||||    
T  2434519 gtgagcttaactcagttggtagagacgatgcatactatatgcaag 2434475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 7030954 - 7030910
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | ||||||||||||| |||||||||    
T  7030954 gtgagcttaactcagttggtatagacaatgcataaaatatgcaag 7030910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 7922311 - 7922267
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||    
T  7922311 gtgagcttatctcagttggtaaagacaatgcataatatatgcaag 7922267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 13276129 - 13276173
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||| || | || ||||||||||||||||||||||    
T  13276129 gtgagcttaactcaattggtagggacaatgcataatatatgcaag 13276173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 20799455 - 20799411
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  20799455 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 20799411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 29908056 - 29908100
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  29908056 gtgagcttaactcagttggtaaggacaatgcataatatatgcaag 29908100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 38374957 - 38375001
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||| |||| | || ||||||||||||||||||||||    
T  38374957 gtgagcttaacttagttggtagggacaatgcataatatatgcaag 38375001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 38453265 - 38453309
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| |||  ||||||||||||||||||||||    
T  38453265 gtgagcttagctcagttggcatggacaatgcataatatatgcaag 38453309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 40847129 - 40847085
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||    
T  40847129 tgtgagcttaactcagttgatagagacaatacataatatatgcaa 40847085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 42316885 - 42316841
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | ||||| |||||||||||||||||    
T  42316885 gtgagcttaactcagttggtaaagacagtgcataatatatgcaag 42316841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 42845025 - 42845069
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  42845025 gtgagcttaactcagttggaaaggacaatgcataatatatgcaag 42845069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 43034403 - 43034359
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  43034403 gtgagcttaactcagttggtatggacaatgcataatatatgcaag 43034359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 50362200 - 50362156
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  50362200 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 50362156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 51002287 - 51002331
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | ||||||||||||| |||||||||    
T  51002287 gtgagcttaactcagttggtatagacaatgcataaaatatgcaag 51002331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 331947 - 331903
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |||||||||||||||||||||||||    
T  331947 gtgagcttaactcagttggtagagacaatgcataatatatgcaag 331903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 16404019 - 16403975
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  16404019 gtgagcttaactcagttggcagagataatgcataatatatgcaag 16403975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 33969866 - 33969908
Alignment:
Q  158 tgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  33969866 tgagcttaactcagttagcagagacattggataatatatgcaa 33969908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 12412277 - 12412321
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||| |||| | |||||||||||||||||||||||||    
T  12412277 gtgagcttaacttagttggtagagacaatgcataatatatgcaag 12412321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 29335636 - 29335592
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| | | |||||||||||||||||||||    
T  29335636 gtgagcttaactcagttagtataaacaatgcataatatatgcaag 29335592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 1918525 - 1918475
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| ||||| ||||||||||| | | |||||||||||||||||||||||    
T  1918525 gttctcgtgagtttaactcagttggtatagacaatgcataatatatgcaag 1918475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 2617268 - 2617226
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||||||| |||| | |||||||||||||||||||||    
T  2617268 ttgtgagcttaacttagttggtagagacaatgcataatatatg 2617226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 1377765 - 1377720
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||| ||||| ||||||||| ||||||||||||||| ||||||||    
T  1377765 ttgtgggcttagctcagttagtagagacaatgcataacatatgcaa 1377720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 1385513 - 1385468
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||| ||||| ||||||||| ||||||||||||||| ||||||||    
T  1385513 ttgtgggcttagctcagttagtagagacaatgcataacatatgcaa 1385468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 29283818 - 29283859
Alignment:
Q  160 agcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||| | |||||||||| ||||||||||||||    
T  29283818 agcttaactcagttggtagagacaatgtataatatatgcaag 29283859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 361752 - 361796
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgca 199  Q
    ||||||||||||||||||| | |  ||||||||||||||||||||    
T  361752 ttgtgagcttaactcagttggtatggacaatgcataatatatgca 361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 3808179 - 3808135
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| |||||||||||||| |  ||||||||||||||||||||||    
T  3808179 gtgaacttaactcagttagtaaggacaatgcataatatatgcaag 3808135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 8381255 - 8381211
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | ||||||||||||| |||||||||    
T  8381255 gtgagcttaactcagttggtaaagacaatgcataacatatgcaag 8381211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 8840581 - 8840541
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||||||||||  | ||||||||||||||||||||    
T  8840581 gtgagcttaactcagttgccggagacaatgcataatatatg 8840541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 9329701 - 9329741
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||| |||||||| | ||||||||||||||||||||||||    
T  9329701 gtgagtttaactcaatcagcagagacaatgcataatatatg 9329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 10780168 - 10780124
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  10780168 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 10780124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 24373771 - 24373727
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| |||||||| || | |||||||||||||||||||||||||    
T  24373771 gtgagtttaactcaattggtagagacaatgcataatatatgcaag 24373727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 32524486 - 32524438
Alignment:
Q  152 ttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    |||| |||||||||||||| || | || |||||||||||||||||||||    
T  32524486 ttctcgtgagcttaactcaattggtagggacaatgcataatatatgcaa 32524438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 11720891 - 11720938
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||    
T  11720891 cttgtgagcttaactcagttggtagggacaatgcataatatatgcaag 11720938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 18619030 - 18619079
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||| ||||||||| ||||| | ||||||||||||||||||||||||||    
T  18619030 gttctcgtgagcttagctcagctggcagagacaatgcataatatatgcaa 18619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 1512855 - 1512895
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  1512855 gtgagcttaactcagttagtagggacaatgcataatatatg 1512895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 27219288 - 27219328
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  27219288 gtgagcttagctcagttagcagagacaatacataatatatg 27219328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 30893933 - 30893977
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | |||||||||||||||||||||||    
T  30893933 gtgagcttaactcagtttgtaaagacaatgcataatatatgcaag 30893977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 33654748 - 33654792
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | || ||||||||||||||||||||||    
T  33654748 gtgagcttaactcagttggtagggacaatgcataatatatgcaag 33654792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 40027831 - 40027785
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||| ||||||||||||||||| |||  ||||||||||||||||||    
T  40027831 gttctcgtgagcttaactcagttggcatggacaatgcataatatatg 40027785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 40056654 - 40056608
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    |||||||||||||||||||| | |  |||||||||||||||||||||    
T  40056654 cttgtgagcttaactcagttggtaaggacaatgcataatatatgcaa 40056608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 9123907 - 9123866
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||||||||||| | | |||||||||||||||||||    
T  9123907 tgtgagcttaactcagttggtaaagacaatgcataatatatg 9123866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 17046329 - 17046378
Alignment:
Q  152 ttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| ||||||||||||||||| | |  ||||||||||||||||||||||    
T  17046329 ttctcgtgagcttaactcagttggtatggacaatgcataatatatgcaag 17046378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 6237780 - 6237736
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| |||||| |||| |||| ||||||||||||||||||||||    
T  6237780 gtgagtttaactaagttggcagggacaatgcataatatatgcaag 6237736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 6489007 - 6489051
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  6489007 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 6489051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 6624776 - 6624820
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| |||  ||||||||||||||||||||||    
T  6624776 gtgagcttagctcagttggcatggacaatgcataatatatgcaag 6624820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 8682455 - 8682415
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||| |||||||||||||| || ||||||||||||||||||    
T  8682455 gtgaccttaactcagttagtagggacaatgcataatatatg 8682415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 15889411 - 15889455
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  15889411 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 15889455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 20175827 - 20175871
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||   ||||||||||||||| |||||||||    
T  20175827 gtgagcttaactcagttgttagagacaatgcataaaatatgcaag 20175871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 22498942 - 22498986
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  22498942 gtgagcttaactcagttggtaaggacaatgcataatatatgcaag 22498986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 25509311 - 25509355
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| || |||||||||||  |||||||||    
T  25509311 gtgagcttaactcagttagtagggacaatgcatataatatgcaag 25509355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 28447493 - 28447533
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||| ||||||||||||| || ||||||||||||||||||    
T  28447493 gtgagtttaactcagttagtagggacaatgcataatatatg 28447533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 32200508 - 32200464
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||    
T  32200508 gtgagcttagctcagttgacagggacaatgcataatatatgcaag 32200464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 34206227 - 34206271
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| ||||||||||| | | |||||||||||||||||||||||    
T  34206227 gtgagtttaactcagttggtaaagacaatgcataatatatgcaag 34206271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 34436851 - 34436895
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  34436851 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 34436895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 35109400 - 35109444
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | ||||||| |||||||||||||||    
T  35109400 gtgagcttaactcagttggtaaagacaatacataatatatgcaag 35109444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 37614488 - 37614444
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | |||||||| ||||||||||||||||    
T  37614488 gtgagcttagctcagttggtagagacaacgcataatatatgcaag 37614444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 39529441 - 39529481
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataa 191  Q
    ||||| ||||||||| |||||||||||| ||||||||||||    
T  39529441 gttctcgtgagcttagctcagttagcagggacaatgcataa 39529481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 41651000 - 41650956
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  41651000 gtgagcttaactcagttggtatggacaatgcataatatatgcaag 41650956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 20079723 - 20079766
Alignment:
Q  158 tgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  20079723 tgagcttaactcagttagtagagacaatgtataatatatgcaag 20079766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 2078234 - 2078284
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| |||| |||||||||||| | |||||||||||||||||||||||||    
T  2078234 gttctcgtgaacttaactcagttggtagagacaatgcataatatatgcaag 2078284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 10922369 - 10922325
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | || ||||||||||||||||||||||    
T  10922369 gtgagcttaactcagttggtagggacaatgcataatatatgcaag 10922325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 33633379 - 33633339
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  33633379 gtgagcttaactcagttagtatagacaatgcataatatatg 33633339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 23525182 - 23525139
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||||||||||||||| |||  |||||||||||||||||||||    
T  23525182 gtgagcttaactcagttggcaaggacaatgcataatatatgcaa 23525139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 38131023 - 38130976
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||||    
T  38131023 cttgtgagcttaactcagttggtatggacaatgcataatatatgcaag 38130976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 52535926 - 52535883
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||    
T  52535926 gtgagcttaactcagttagtatagacaatacataatatatgcaa 52535883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 19468449 - 19468495
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| | |  ||||||||||||||||||||||    
T  19468449 ttgtgagcttaactcagttggtatggacaatgcataatatatgcaag 19468495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 32909368 - 32909318
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| ||||||||||||||||||| |  |||||||||||| |||||||||    
T  32909368 gttctcgtgagcttaactcagttagtatggacaatgcataaaatatgcaag 32909318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 48849829 - 48849780
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  48849829 gttcttgtgagcttaactcagttggta-tgacaatgcataatatatgcaag 48849780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 8075788 - 8075829
Alignment:
Q  160 agcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||| ||||||||  |||||||||||||||||||||||||    
T  8075788 agcttacctcagttaatagagacaatgcataatatatgcaag 8075829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 17278366 - 17278317
Alignment:
Q  152 ttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| |||||||||||||| |||| ||||||||||||||| |||| ||||    
T  17278366 ttctcgtgagcttaactcaattagtagagacaatgcataaaatatacaag 17278317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 22843463 - 22843504
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||| ||||||||| | |||||||||||||||||||    
T  22843463 tgtgagcttagctcagttagtaaagacaatgcataatatatg 22843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 49787724 - 49787687
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatat 194  Q
    ||||||||||||||||||| || |||||||||||||||    
T  49787724 gtgagcttaactcagttagtagggacaatgcataatat 49787687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 7464552 - 7464512
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  7464552 gtgagcttaactcagttggtagggacaatgcataatatatg 7464512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 7738669 - 7738713
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | || |||||||||||| |||||||||    
T  7738669 gtgagcttaactcagttggtagggacaatgcataaaatatgcaag 7738713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 17588362 - 17588406
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  17588362 gtgagcttaactcagttggtaaggacaatgcataatatatgcaag 17588406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 18870786 - 18870742
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  18870786 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 18870742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 30050489 - 30050445
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||| |||||||||| |  ||||||||||||||||||||||    
T  30050489 gtgagcttgactcagttagtatggacaatgcataatatatgcaag 30050445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 33223868 - 33223912
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | ||| |||||||||||||||||||||    
T  33223868 gtgagcttagctcagttggtagaaacaatgcataatatatgcaag 33223912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 49600325 - 49600281
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||||| |||||||||  ||||||||||||||    
T  49600325 gtgagcttagctcagttagtagagacaataaataatatatgcaag 49600281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 51882261 - 51882217
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  51882261 gtgagcttaactcagttggtatggacaatgcataatatatgcaag 51882217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 5270801 - 5270758
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  5270801 gtgagcttaactcagttagtagagataatgcataatatatgcaa 5270758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 2889987 - 2889943
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | || ||||||||||||||||||||||    
T  2889987 gtgagcttaactcagttggtagggacaatgcataatatatgcaag 2889943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 5280631 - 5280675
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | ||||||| |||||||||||||||||    
T  5280631 gtgagcttaactcagttggaagagacagtgcataatatatgcaag 5280675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 6842351 - 6842307
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatata 195  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||    
T  6842351 gttctcgtgagcttaactcaattagtagagacaatgcataatata 6842307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 15729430 - 15729470
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  15729430 gtgagcttaactcagttggtagagacaatgcataatatatg 15729470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 40818607 - 40818651
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||    
T  40818607 gtgagcttaactcagttagtagagacaatgcataagttatgcaag 40818651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 47961350 - 47961306
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||    
T  47961350 gtgagtttagctcagttggcagagacaatgcataatatatgcaag 47961306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 619470 - 619427
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatgca 199  Q
    |||||||||||||||||| | |||||||||| ||||||||||||    
T  619470 tgtgagcttaactcagttggtagagacaatgtataatatatgca 619427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 33153944 - 33153901
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  33153944 cttgtgagcttaactcagttggtagggacaatgcataatatatg 33153901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 43284090 - 43284051
Alignment:
Q  158 tgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  43284090 tgagcttaactcagttagtagagacaatgtataatatatg 43284051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 13775662 - 13775628
Alignment:
Q  167 ctcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| |||||||||||||||||||||||||    
T  13775662 ctcagttagtagagacaatgcataatatatgcaag 13775628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 28039923 - 28039877
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| | |  ||||||||||||||||||||||    
T  28039923 ttgtgagcttaactcagttggtaaggacaatgcataatatatgcaag 28039877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 28832238 - 28832188
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||||||| | |   |||||||||||||||||||||    
T  28832238 gttcttgtgagcttaactcagttggtatgaacaatgcataatatatgcaag 28832188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 1091179 - 1091223
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | |||||||||||||| ||||||||    
T  1091179 gtgagcttaactcagttggtatagacaatgcataatgtatgcaag 1091223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 1794596 - 1794640
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||||| |  ||||||||||||||||||||||    
T  1794596 gtgagcttagctcagttagtatggacaatgcataatatatgcaag 1794640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 5907799 - 5907843
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| |||  ||||||||||||||||||||||    
T  5907799 gtgagcttagctcagttggcaaggacaatgcataatatatgcaag 5907843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 7925364 - 7925404
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||| ||||||| | |||||||||||||||||||||    
T  7925364 gtgagcttagctcagttggtagagacaatgcataatatatg 7925404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 11242046 - 11242006
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  11242046 gtgagtttaactcagttgacagagacaatgcataatatatg 11242006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 14880828 - 14880872
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| || |||||| || ||||||||||||||||||||||    
T  14880828 gtgagcttagcttagttagtagggacaatgcataatatatgcaag 14880872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 21400084 - 21400040
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  21400084 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 21400040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 23397384 - 23397340
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| |  |||||||||||| |||||||||    
T  23397384 gtgagcttaactcagttagtaatgacaatgcataacatatgcaag 23397340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 30678874 - 30678834
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  30678874 gtgagcttaactcagttggtagggacaatgcataatatatg 30678834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 32950822 - 32950778
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | | |||||||||||||||||||||    
T  32950822 gtgagcttaactcagttggtataaacaatgcataatatatgcaag 32950778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 36371101 - 36371061
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||| ||||||| | |||||||||||||||||||||    
T  36371101 gtgagcttagctcagttggtagagacaatgcataatatatg 36371061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 48131289 - 48131249
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||| ||||||||||| ||||||| |||||||||||||||    
T  48131289 gtgagtttaactcagttggcagagataatgcataatatatg 48131249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 49875660 - 49875616
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  49875660 gtgagcttaactcagttggtaaggacaatgcataatatatgcaag 49875616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 52441572 - 52441528
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||    
T  52441572 gtgagcttagctcagttggtatagacaatgcataatatatgcaag 52441528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 42700499 - 42700549
Alignment:
Q  151 gttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| ||||||||||||| ||| | |||||||||||||||||||||||||    
T  42700499 gttctcgtgagcttaactcggttggtagagacaatgcataatatatgcaag 42700549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 7679905 - 7679946
Alignment:
Q  160 agcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  7679905 agcttaactcagttggcaaagacaatgcataatatatgcaag 7679946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 15079213 - 15079169
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | || ||||||||||||||||||||||    
T  15079213 gtgagcttaactcagttggtagggacaatgcataatatatgcaag 15079169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 37015897 - 37015853
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||    
T  37015897 gtgagcttagctcagttggtagagacaatgcataatatatgcaag 37015853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 11052978 - 11053020
Alignment:
Q  159 gagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  11052978 gagcttaactcagttagtatggacaatgcataatatatgcaag 11053020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 40512693 - 40512647
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| | ||||||||| |||||||||| ||||    
T  40512693 ttgtgagcttaactcagttggtagagacaatacataatatatacaag 40512647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 13105093 - 13105138
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||| ||||||||||| | || ||||||||||||||||||||||    
T  13105093 tgtgagattaactcagttggtagggacaatgcataatatatgcaag 13105138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 1877723 - 1877679
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||   | |||||||||||||||||||||||    
T  1877723 gtgagcttaactcagttgatatagacaatgcataatatatgcaag 1877679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 7553679 - 7553723
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| ||||||||||| | || ||||||||||||||||||||||    
T  7553679 gtgagtttaactcagttggtagggacaatgcataatatatgcaag 7553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 11708986 - 11709030
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  11708986 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 11709030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 13286131 - 13286175
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||    
T  13286131 gtgagcttagctcagttggtatagacaatgcataatatatgcaag 13286175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 13357502 - 13357458
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  13357502 gtgagcttaactcagttggtatggacaatgcataatatatgcaag 13357458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 15188899 - 15188939
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  15188899 gtgagcttaactcagttagtatggacaatgcataatatatg 15188939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 21557433 - 21557473
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  21557433 gtgagcttaactcagttagtatggacaatgcataatatatg 21557473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 28084282 - 28084326
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||   |||||||||| ||||||||||||||    
T  28084282 gtgagcttaactcagttgatagagacaatgaataatatatgcaag 28084326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 39821884 - 39821928
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  39821884 gtgagcttagctcagttggtagggacaatgcataatatatgcaag 39821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 41311982 - 41312028
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||||    
T  41311982 ttgtgagcttagttcagttagcagggacaatgcataatatatgcaag 41312028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 31815953 - 31815904
Alignment:
Q  152 ttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| ||||||||||||||||| | || ||||||||||||||||||||||    
T  31815953 ttctcgtgagcttaactcagttggtagggacaatgcataatatatgcaag 31815904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 7206125 - 7206169
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||    
T  7206125 gtgagcttagctcagttggtagagacaatgcataatatatgcaag 7206169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 10058870 - 10058914
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    ||||||||||||||| || | ||||||||||||||||||||||||    
T  10058870 tgtgagcttaactcaattggtagagacaatgcataatatatgcaa 10058914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 22608527 - 22608571
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||    
T  22608527 gtgagcttagctcagttggtagagacaatgcataatatatgcaag 22608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 27412897 - 27412857
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  27412897 gtgagcttaactcagttggtagagacaatgcataatatatg 27412857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 37320578 - 37320534
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | |||||||||||||||||||||||    
T  37320578 gtgagcttaactcagttggtaaagacaatgcataatatatgcaag 37320534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 27152350 - 27152397
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||||| | || || |||||||||||||||||||    
T  27152350 cttgtgagcttaactcagttggtagggataatgcataatatatgcaag 27152397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 28644522 - 28644565
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  28644522 cttgtgagcttaactcagttggtagggacaatgcataatatatg 28644565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 4897541 - 4897587
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| | |  ||||||||||||||||||||||    
T  4897541 ttgtgagcttaactcagttggtaaggacaatgcataatatatgcaag 4897587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 4944935 - 4944981
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||||| | |  ||||||||||||||||||||||    
T  4944935 ttgtgagcttaactcagttggtaaggacaatgcataatatatgcaag 4944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 18324956 - 18324911
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||| | |  ||||||||||||||||||||||    
T  18324956 tgtgagcttaactcagttggtaaggacaatgcataatatatgcaag 18324911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 20565141 - 20565092
Alignment:
Q  152 ttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||| ||||||||| ||||||| | || ||||||||||||||||||||||    
T  20565141 ttctcgtgagcttagctcagttggtagggacaatgcataatatatgcaag 20565092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 2256971 - 2257015
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  2256971 gtgagcttaactcagttggtatggacaatgcataatatatgcaag 2257015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 5676739 - 5676783
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  5676739 gtgagcttaactcagttggtaatgacaatgcataatatatgcaag 5676783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 15939294 - 15939334
Alignment:
Q  159 gagcttaactcagttagcagagacaatgcataatatatgca 199  Q
    |||||||||||| || ||||||||| |||||||||||||||    
T  15939294 gagcttaactcaattggcagagacattgcataatatatgca 15939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 20120786 - 20120738
Alignment:
Q  153 tcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||| ||||||| | |  ||||||||||||||||||||||    
T  20120786 tcttgtgagcttagctcagttggtaaggacaatgcataatatatgcaag 20120738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 34977204 - 34977248
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  34977204 gtgagcttaactcagttggtatggacaatgcataatatatgcaag 34977248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 43484723 - 43484687
Alignment:
Q  160 agcttaactcagttagcagagacaatgcataatatat 196  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  43484723 agcttagctcagttggcagagacaatgcataatatat 43484687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 45032693 - 45032737
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  45032693 gtgagcttacctcagttggtagggacaatgcataatatatgcaag 45032737  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 1627997 - 1627952
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||    
T  1627997 tgtgagcttaactcagttggcaaagacaatgcatgatatatgcaag 1627952  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 23221391 - 23221432
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  23221391 tgtgagcttaactcagttggtagagacaatgcataatatatg 23221432  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 3948046 - 3948098
Alignment:
Q  149 ccgttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||| ||||| |||||||||||   |||||||||||||||||||||||||    
T  3948046 ccgttctcgtgagtttaactcagttgatagagacaatgcataatatatgcaag 3948098  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 8879808 - 8879764
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | | |||||||||||||||||||||||    
T  8879808 gtgagcttaactcagttggtatagacaatgcataatatatgcaag 8879764  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 30463432 - 30463388
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||    
T  30463432 gtgaggttaactcagttagtatagacaatgcataatatatgcaag 30463388  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 22991455 - 22991408
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||||    
T  22991455 cttgtgagcttaactcagttggtatggacaatgcataatatatgcaag 22991408  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 37516866 - 37516819
Alignment:
Q  154 cttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||||||| |  |||||||||||| |||||||||    
T  37516866 cttgtgagcttaactcagttagtatggacaatgcataacatatgcaag 37516819  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 24559536 - 24559494
Alignment:
Q  158 tgagcttaactcagttagcagagacaatgcataatatatgcaa 200  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  24559536 tgagcttaactcagttagtaggaacaatgcataatatatgcaa 24559494  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 25923389 - 25923435
Alignment:
Q  155 ttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||| |||||||| || || |||||||||||||||||||    
T  25923389 ttgtgagcttaaatcagttagtagggataatgcataatatatgcaag 25923435  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 34809347 - 34809385
Alignment:
Q  159 gagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  34809347 gagcttaactcagttagtagggacaatgcataatatatg 34809385  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 6384850 - 6384895
Alignment:
Q  156 tgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    |||||||||||||||||||  |  ||||||||||||||||||||||    
T  6384850 tgtgagcttaactcagttaataaggacaatgcataatatatgcaag 6384895  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 8683070 - 8683114
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||    
T  8683070 gtgagcttagctcagttggtatagacaatgcataatatatgcaag 8683114  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 15913551 - 15913595
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||| |||||||||||   |||||||||||||||||||||||||    
T  15913551 gtgagattaactcagttgctagagacaatgcataatatatgcaag 15913595  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 18505726 - 18505674
Alignment:
Q  149 ccgttcttgtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||| ||||||||| ||||||| | || |||||||||||| |||||||||    
T  18505726 ccgttctcgtgagcttagctcagttggtagggacaatgcataaaatatgcaag 18505674  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 22267581 - 22267621
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  22267581 gtgagtttaactcagttggtagagacaatgcataatatatg 22267621  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 42435459 - 42435415
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||    
T  42435459 gtgagcttagctcagttggtagagactatgcataatatatgcaag 42435415  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 44454512 - 44454556
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | || |||||||||||| |||||||||    
T  44454512 gtgagcttaactcagttggtagggacaatgcataaaatatgcaag 44454556  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 48007608 - 48007564
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  48007608 gtgagcttaactcagttggtaatgacaatgcataatatatgcaag 48007564  T

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Target: scaffold1063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 1121 - 1081
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatg 197  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  1121 gtgagcttaactcagttagtagggacaatgcataatatatg 1081  T

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Target: scaffold0777 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 3129 - 3168
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatat 196  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  3129 gtgagcttaactcagttggcagggacaatgcataatatat 3168  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 25389 - 25433
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  25389 gtgagcttaactcagttggtaaggacaatgcataatatatgcaag 25433  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 34949 - 34905
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||    
T  34949 gtgagcttaactcagttggtaaggacaatgcataatatatgcaag 34905  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 53441 - 53397
Alignment:
Q  157 gtgagcttaactcagttagcagagacaatgcataatatatgcaag 201  Q
    ||||||||||||||||| | || |||||||||||| |||||||||    
T  53441 gtgagcttaactcagttggaagggacaatgcataaaatatgcaag 53397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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