View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_12 (Length: 289)
Name: NF19092_low_12
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 36 - 279
Target Start/End: Original strand, 28463339 - 28463582
Alignment:
| Q |
36 |
ggaatataatgagaaaggttgatcaaatccactgcagtcttcattgcatgctctctttaaccactgacattaccaacttccatgtggagctaaattagta |
135 |
Q |
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| T |
28463339 |
ggaatataatgagaaaggttgatcaaatccactgcagtcttcattgcatgctctctttaaccactgacattaccaacttccatttggagcgaaattagta |
28463438 |
T |
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| Q |
136 |
aatttcacaacaacnnnnnnnnntctcaattattaggcaaggaactgagcaacaataaggcttttaaatcatcatacaatttcttataaacagttgtctg |
235 |
Q |
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| T |
28463439 |
aatttcacaacaacaaaaaaaaatctcaattattaggcaaggaactgagcaacaataaggcttttaactcatcatacaatttcttatcagcagttgtctg |
28463538 |
T |
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| Q |
236 |
ctgattcccattggtcagaaacacactaatatgctttgcctttg |
279 |
Q |
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| T |
28463539 |
ctgattcccattggtcagaaacacactaatatgctttgcctttg |
28463582 |
T |
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