View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_16 (Length: 258)
Name: NF19092_low_16
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 3752843 - 3752631
Alignment:
| Q |
13 |
aaaattaaaaaatgtcaagatacatatagatacacataattttacaaactcattcttcaaattaaaccacatgattgatattttnnnnnnntattctgca |
112 |
Q |
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| T |
3752843 |
aaaattaaaaaatgtcaagatacatatagatacacataattttacaaactcattcttcaaattaaaccacatgattaatatttaaaaaatatattttgca |
3752744 |
T |
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| Q |
113 |
tttaatcatattaaactaaataactcatctcaaaaatattgaaaaatcattcataacacta-nnnnnnnactgcaaacactaattaaaagtatactctga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3752743 |
tttaatcatattaaactaaataactcatctcaaaaatattgaaaaatcattcataacactattttttttactgcaaacactaattaaaagtatactctga |
3752644 |
T |
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| Q |
212 |
atattcaagtcat |
224 |
Q |
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|||||| |||||| |
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| T |
3752643 |
atattcgagtcat |
3752631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 25510687 - 25510815
Alignment:
| Q |
47 |
cataattttacaaactcattcttcaaattaaaccacatgattgatatttt-nnnnnnntat-tctgcatttaatcatattaaactaaataactcatctca |
144 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||| |||||||||| |||||||||| | |||||||||| |
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| T |
25510687 |
cataattttacaaactcattcttcaaattaaactacatgattaatattttaaaaaaaacatctcttcatttaatcagattaaactaacttactcatctca |
25510786 |
T |
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| Q |
145 |
aaaatattgaaaaatcattcataacacta |
173 |
Q |
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| T |
25510787 |
aaaatatttataaatcgttcataacacta |
25510815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 31985988 - 31985860
Alignment:
| Q |
47 |
cataattttacaaactcattcttcaaattaaaccacatgattgatatttt-nnnnnnntat-tctgcatttaatcatattaaactaaataactcatctca |
144 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||| |||||||||| |||||||||| | |||||||||| |
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| T |
31985988 |
cataattttacaaactcattcttcaaattaaactacatgattaatattttaaaaaaaacatctcttcatttaatcagattaaactaacttactcatctca |
31985889 |
T |
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| Q |
145 |
aaaatattgaaaaatcattcataacacta |
173 |
Q |
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|||||||| | ||||| |||||||||||| |
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| T |
31985888 |
aaaatatttataaatcgttcataacacta |
31985860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 26492807 - 26492862
Alignment:
| Q |
111 |
catttaatcatattaaactaaataactcatctcaaaaatattgaaaaatcattcat |
166 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26492807 |
catttaatcagattaaactaaatgactcatctcaaaaatattgaaaaatcattcat |
26492862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 26492734 - 26492783
Alignment:
| Q |
42 |
atacacataattttacaaac---tcattcttcaaattaaaccacatgatt |
88 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
26492734 |
atacacataattttacaaacagatcattcttcaaattaaactacatgatt |
26492783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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