View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_18 (Length: 250)
Name: NF19092_low_18
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 48469068 - 48468876
Alignment:
| Q |
41 |
gatgcaggaatcagacctacatcttatgcagatgaaattttgcaagaaaaaacatctattaatttaatattgataaattttcataaccatagccttgaca |
140 |
Q |
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| T |
48469068 |
gatgcatgaatcagacctacatcttatgcagatgaaattttgcaagaaaaaacatctattaatttaatattgataaattttcataaccatagccttgaca |
48468969 |
T |
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| Q |
141 |
atcattcaatgtgggagtttgagttaagagtcccaaatccgactgagatatgacctaaaaatgtatttataagtgggaagtatccctcacttt |
233 |
Q |
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| T |
48468968 |
atcattcaatgtgggagtttgagttaagagtcccaaatccgactgagatatgacctaaaaatgtatttataagtgggaagtatccctcacttt |
48468876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 48884603 - 48884679
Alignment:
| Q |
1 |
tagccccaaaactctattagctgcatgatattttaatctcgatgcaggaatcagacctacatcttatgcagatgaaa |
77 |
Q |
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| T |
48884603 |
tagccccaaaactctattagctacatgatattttaatctcgatgcatgaatcagacctacatcttatgcagatgaaa |
48884679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 48477428 - 48477378
Alignment:
| Q |
27 |
gatattttaatctcgatgcaggaatcagacctacatcttatgcagatgaaa |
77 |
Q |
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| T |
48477428 |
gatattttaatctcgatgcatgaatcagacctccatcttatgcagatgaaa |
48477378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 38819114 - 38819227
Alignment:
| Q |
50 |
atcagacctacatcttatgcagatgaaattttgcaagaaaaaacatctattaatttaatattgataaattttcataaccatagccttgacaatcattcaa |
149 |
Q |
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| T |
38819114 |
atcagacctccatcttatgcaggtgaagttttgcaagaaaaaacatctattaatttaatattgataaattttcataaccatagccttgacaatcattcaa |
38819213 |
T |
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| Q |
150 |
tgtgggagtttgag |
163 |
Q |
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| T |
38819214 |
tgtgggagtttgag |
38819227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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