View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_19 (Length: 247)
Name: NF19092_low_19
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 43352481 - 43352249
Alignment:
| Q |
1 |
ttttttacatgtttagaacccctcttatgtcaaaagtaaatttctcnnnnnnnnngtcacaagatgatttcgaagcatgtaacaaatatgttcggattct |
100 |
Q |
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| T |
43352481 |
ttttttacatgtttagaacccctcttgtgtcaaaagtaaatttcacattttttttgtcccaagatgatttcgaagcatgtaacaaatatgttcggattct |
43352382 |
T |
|
| Q |
101 |
aaaatccgaatttttaaaaatcttcaaaaatatagtcagctatggttgaaccgtggccaatttttaactttaaaaaaggtaaaaatactcatttcggatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||| ||||||||||||| ||||| ||| |
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| T |
43352381 |
aaaatccgaatttttaaaaatcttcaaaaatatagtcaactacggttgaatcatggccaatttttaactttaaaaatggtaaaaatactcgtttcgaatt |
43352282 |
T |
|
| Q |
201 |
ttcaaaggacacgcgagaaaaggatgaagggtg |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43352281 |
ttcaaaggacacgcgagaaaaggatgaagggtg |
43352249 |
T |
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